Main Page Class Hierarchy Compound List File List Compound Members File Members

FlowReact File Members

_ | a | b | c | d | e | f | g | h | i | k | l | m | n | o | p | r | s | t | u | w | x | z

Here is a list of all file members with links to the files they belong to:

- _ -

__MTRAND_hiBit : mt.h
__MTRAND_K : mt.h
__MTRAND_loBit : mt.h
__MTRAND_loBits : mt.h
__MTRAND_M : mt.h
__MTRAND_mixBits : mt.h
__MTRAND_N : mt.h
__PMMMLCG_A : pmmmlcg.h
__PMMMLCG_M : pmmmlcg.h
__PMMMLCG_Q : pmmmlcg.h
__PMMMLCG_R : pmmmlcg.h

- a -

a_energy() : aenergy.h
AAclasses : trop_util.h
AAtypes : trop_util.h
abs() : functions.h
alphabet : trop_util.h
amino_acid_order : matrices.h
Aminoacids : trop_util.h

- b -

b_settings_dumpRepl : globals.h
b_settings_fitbutdead : globals.h
b_settings_history : globals.h
b_settings_lineage : globals.h
b_settings_seqhistory : globals.h
basepair : gparameters.h
baum : gdatastruct.h
blosum30mt : matrices.h
blosum40mt : matrices.h
blosum45mt : matrices.h
blosum62mt2 : matrices.h
blosum80mt : matrices.h
BONUS : gparameters.h
bp_distance() : functions.h

- c -

c_settings_fitbutdeadFilename : globals.h
c_settings_historyFilename : globals.h
c_settings_infilename : globals.h
c_settings_outFilename : globals.h
c_settings_polyprot : loc_globals.h
c_settings_seqhistoryFilename : globals.h
c_settings_surface_parm : loc_globals.h
c_settings_target_pdb : loc_globals.h
c_settings_tess_parm : loc_globals.h
calculate_distance() : functions.h
calculate_fitness() : functions.h
call_qhull() : trop_util.h
check_pot() : trop_util.h
clustalvdnamt : matrices.h
coeff : globals.h
compress_structure() : functions.h
coordT : trop_util.h
createLogFile() : functions.h

- d -

d_settings_accuracy : globals.h
d_settings_dumpTime : globals.h
d_settings_insdelProb : globals.h
d_settings_jump : globals_local.h
d_settings_maxCapacity : globalsBatch.h
d_settings_minCapacity : globalsBatch.h
d_settings_monitorTime : globals.h
d_settings_target_stop : globals.h
def_E_set : gparameters.h
Delaunay_simplex_class() : trop_util.h
Delauney_classes : trop_util.h
draw_triangles() : surface.h

- e -

E_set : gdatastruct.h
energy_of_struct() : utils.h
energy_of_struct_stat() : utils.h
expand_Full() : utils.h

- f -

F_set : gdatastruct.h
filter_delauney : trop_util.h
find_isolated_triangles() : surface.h
fold() : utils.h
FORBIDDEN : gparameters.h
free_arrays() : utils.h
free_pkarrays() : utils.h
free_S_POT() : surface.h
free_SP() : trop_util.h
free_tree() : utils.h
free_Tropsha_potential() : trop_util.h

- g -

GASCONST : gparameters.h
get_AAseq() : trop_util.h
get_base_pairs() : functions.h
get_surface() : surface.h
getmatching_base() : functions.h
gon120mt : matrices.h
gon160mt : matrices.h
gon250mt : matrices.h
gon300mt : matrices.h
gon350mt : matrices.h
gon40mt : matrices.h
gon80mt : matrices.h

- h -

hamming() : utils.h
HASHSIZE : ZScoreReactor/mrnaseq.h, StructLifeReactor/codeseq.h, pseudoseq.h, ProtReactor/mrnaseq.h, pksequence.h, NoMutReactor/codeseq.h, minseq.h, evalseq.h, bievalseq.h, structseq.h, sequence.h, phenotype.h, bonusseq.h

- i -

idmat : matrices.h
INF : gparameters.h
init_rand() : utils.h
initialize_fold() : utils.h
initialize_pkfold() : utils.h
int_urn() : utils.h

- k -

K0 : gparameters.h

- l -

Law_and_Order : gparameters.h
ListName() : trop_util.h

- m -

M_set : gdatastruct.h
make_mol() : gbaum.h
make_pair_matrix() : gparameters.h
make_pair_table() : utils.h
make_parameters() : gparameters.h
Make_swString() : utils.h
make_tree() : utils.h
MAXALPHA : gparameters.h
maxFitness : globals.h
MAXLOOP : gparameters.h
MAXS1 : gparameters.h
MAXS2 : gparameters.h
METAXA : trop_util.h
MIN2 : gparameters.h
mol : gdatastruct.h

- n -

n_settings_capacity : globals.h
n_settings_dist : globals.h
n_settings_dumpRepl : globals.h
n_settings_folding_time : globals.h
n_settings_insdelMaxLenght : globals.h
n_settings_kftimes : globals.h
n_settings_seed : globals.h
n_settings_stoptime : globals.h
NBASES : gparameters.h
NBPAIRS : gparameters.h
nrerror() : utils.h
nucleic_acid_order : matrices.h

- o -

operator<<() : sequence.h
ORDER : gparameters.h

- p -

pack_sequence() : utils.h
pack_structure() : utils.h
pam120mt : matrices.h
pam20mt : matrices.h
pam350mt : matrices.h
pam60mt : matrices.h
pk_energy_init() : aenergy.h
pkfold() : utils.h
pkhamming() : functions.h
print_surface_potential() : surface.h
print_triangles() : surface.h
process_BatchCommandline() : BatchReactor/commandline.h
process_commandline() : functions.h
process_InsDelCommandline() : InsDelReactor/commandline.h
process_JumpCommandline() : JumpReactor/commandline.h
process_ProtCommandline() : ZScoreReactor/commandline.h

- r -

rand6l() : trop_util.h
rand7l() : trop_util.h
randaa() : trop_util.h
randEaa() : trop_util.h
random_string() : utils.h
randomize() : utils.h
randSaa() : trop_util.h
randTaa6() : trop_util.h
randTaa7() : trop_util.h
read_CB_pdb() : trop_util.h
read_input_file() : functions.h
read_pdb() : trop_util.h
read_Surface_potential() : trop_util.h
read_tesselation() : trop_util.h
read_Tropsha_potential() : trop_util.h
replicate() : functions.h
replicate_bp_match() : functions.h
rev_col : gbaum.h
Ros_20 : trop_util.h
Ros_6 : trop_util.h
Ros_7 : trop_util.h
Rosetta : trop_util.h
rtype : gparameters.h

- s -

save_tesselation() : trop_util.h
set_mol() : gbaum.h
set_parameters() : gparameters.h
setRandom() : ZScoreReactor/commandline.h, InsDelReactor/commandline.h, BatchReactor/commandline.h
showhelp() : functions.h
showhelpBatch() : BatchReactor/commandline.h
showhelpInsDel() : JumpReactor/commandline.h, InsDelReactor/commandline.h
showhelpProt() : ZScoreReactor/commandline.h
space() : utils.h
start_up() : gparameters.h
string_edit_distance() : utils.h
stringEdit_distance() : functions.h
struc2tree() : gbaum.h
Surface_score() : trop_util.h
Surface_simplex_class() : trop_util.h
swgapdnamt : matrices.h
symbols : globals.h

- t -

tesselate() : trop_util.h
time_stamp() : utils.h
translate20to6() : trop_util.h
translate20to7() : trop_util.h
translate_ONE_2_NUM() : trop_util.h
translate_ONE_2_THREE() : trop_util.h
translate_THREE_2_ONE() : trop_util.h
translate_TRIPPLE() : trop_util.h
tree_edit_distance() : utils.h
treeEdit_distance() : functions.h
tropscore() : trop_util.h
TURN : gparameters.h

- u -

uint32 : randomwell.h, randomng.h, pmmmlcg.h, mt.h
unpack_sequence() : utils.h
unpack_structure() : utils.h
update_fold_params() : utils.h
urn() : utils.h

- w -

weight : globals.h

- x -

xsubi : globals.h

- z -

zscore() : trop_util.h

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