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utils.h File Reference

Go to the source code of this file.

Compounds
struct	Postorder_list
struct	swString
struct	Tree
Functions
void*	space (unsigned size)
void	nrerror (const char message[])
void	randomize (long val)
void	init_rand (void)
double	urn (void)
int	int_urn (int from, int to)
char*	time_stamp (void)
char*	random_string (int l, const char symbols[])
int	hamming (const char s1[], const char s2[])
char*	expand_Full (char *full)
Tree*	make_tree (char *xstruc)
float	tree_edit_distance (Tree *T1, Tree *T2)
void	free_tree (Tree *t)
short*	make_pair_table (const char *structure)
swString*	Make_swString (char *string)
float	string_edit_distance (swString *T1, swString *T2)
char*	pack_structure (const char *struc)
char*	unpack_structure (const char *packed)
char*	pack_sequence (const char *sequ)
char*	unpack_sequence (const char *packed)
float	fold (char *sequence, char *structure)
float	energy_of_struct (char *string, char *structure)
float	energy_of_struct_stat (char *string, char *structure, int *status)
void	free_arrays (void)
void	initialize_fold (int length)
void	update_fold_params (void)
void	initialize_pkfold (unsigned int length)
float	pkfold (char *sequence, char *structure)
void	free_pkarrays (void)

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Function Documentation

swString* Make_swString ( char * string )

Referenced by swString::weight().

float energy_of_struct ( char * string, char * structure )

Referenced by swString::weight().

float energy_of_struct_stat ( char * string, char * structure, int * status )

Referenced by swString::weight().

char* expand_Full ( char * full )

Referenced by swString::weight().

float fold ( char * sequence, char * structure )

Referenced by swString::weight().

void free_arrays ( void )

Referenced by swString::weight().

void free_pkarrays ( void )

Referenced by swString::weight().

void free_tree ( Tree * t )

Referenced by swString::weight().

int hamming ( const char s1[], const char s2[] )

Referenced by swString::weight().

void init_rand ( void )

Referenced by swString::weight().

void initialize_fold ( int length )

Referenced by swString::weight().

void initialize_pkfold ( unsigned int length )

Referenced by swString::weight().

int int_urn ( int from, int to )

Referenced by swString::weight().

short* make_pair_table ( const char * structure )

Referenced by swString::weight().

Tree* make_tree ( char * xstruc )

Referenced by swString::weight().

void nrerror ( const char message[] )

Referenced by swString::weight().

char* pack_sequence ( const char * sequ )

Referenced by swString::weight().

char* pack_structure ( const char * struc )

Referenced by swString::weight().

float pkfold ( char * sequence, char * structure )

Referenced by swString::weight().

char* random_string ( int l, const char symbols[] )

Referenced by swString::weight().

void randomize ( long val )

Referenced by swString::weight().

void* space ( unsigned size )

Referenced by swString::weight().

float string_edit_distance ( swString * T1, swString * T2 )

Referenced by swString::weight().

char* time_stamp ( void )

Referenced by swString::weight().

float tree_edit_distance ( Tree * T1, Tree * T2 )

Referenced by swString::weight().

char* unpack_sequence ( const char * packed )

Referenced by swString::weight().

char* unpack_structure ( const char * packed )

Referenced by swString::weight().

void update_fold_params ( void )

Referenced by swString::weight().

double urn ( void )

Referenced by swString::weight().

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