As part of all this, we sometimes branch out into the more biological side of things, for example with miRNA detection in Hackl et al. (2011) and Bernhart, Höner zu Siederdissen, and Hofacker (2011) .
While studying computer science in Bielefeld, I was working on analysis of medical data, described in Höner zu Siederdissen, Ragg, and Rahmann (2007) .
Höner zu Siederdissen (2007) : Given just the spectrum, what are likely candidates for the correct sum formula. Convex optimization, implemented in Haskell.
Bernhart, Stephan H., Christian Höner zu Siederdissen, and Ivo L. Hofacker. 2011. Micro RNA Discovery in Sequencing Data without a Genome. Alternative Splicing SIG, ISMB/ECCB 2011, Vienna.
Hackl, Matthias, Tobias Jakobi, Jochen Blom, Daniel Doppmeier, Karina Brinkrolf, Rafael Szczepanowski, Stephan H. Bernhart, Christian Höner zu Siederdissen, Juan A. Hernandez Bort, Matthias Wieser, Renate Kunert, Simon Jeffs, Ivo L. Hofacker, Alexander Goesmann, Alfred Pühler, Nicole Borth, and Johannes Grillari. 2011. Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: identification, annotation and profiling of microRNAs as targets for cellular engineering. Journal of Biotechnology 153: 62–75. doi:10.1016/j.jbiotec.2011.02.011. http://www.sciencedirect.com/science/article/pii/S0168165611001155.
Höner zu Siederdissen, Christian. 2007. Determination of the Sum Formula for Small Molecules from High Resolution FT-ICR Spectra.
Höner zu Siederdissen, Christian, Susanne Ragg, and Sven Rahmann. 2007. Discovering Biomarkers for Myocardial Infarction from SELDI-TOF Spectra. In Advances in Data Analysis, ed. Reinhold Decker and Hans -J Lenz, 569–76. Springer Berlin Heidelberg.