Publications

2013

  1. Christian Höner zu Siederdissen. 2013. ADPfusion: Efficient Dynamic Programming over Sequence Data. submitted.

  2. Christian Höner zu Siederdissen, Stefan Hammer, Ivo L. Hofacker, Christoph Flamm, and Peter F. Stadler. 2013. Computational Design of RNAs with Complex Energy Landscapes. submitted.

  3. Christian Höner zu Siederdissen. 2013. Grammatical Approaches to Problems in RNA Bioinformatics.

  4. Corinna Theis, Christian Höner zu Siederdissen, Ivo L. Hofacker, and Jan Gorodkin. 2013. Automated identification of 3D modules with discriminative power in RNA structural alignments. submitted.

  5. Florian Eggenhofer, Ivo L. Hofacker, and Christian Höner zu Siederdissen. 2013. CMCompare webserver: comparing RNA families via covariance models. Nucleic Acids Research. web

  6. Ronny Lorenz, Stephan H. Bernhart, Jing Qin, Christian Höner zu Siederdissen, Andrea Tanzer, Fabian Amman, Ivo L. Hofacker, and Peter F. Stadler. 2013. 2D meets 4G: G-Quadruplexes in RNA Secondary Structure Prediction. IEEE/ACM Transactions on Computation Biology and Bioinformatics. web

  7. Joaquin Vierna, Stefanie Wehner, Christian Höner zu Siederdissen, Andrés Martínez-Lage, and Manja Marz. 2013. Evolutionary analysis of 5S ribosomal DNA in metazoans. submitted.

2012

  1. Christian Höner zu Siederdissen. 2012. Sneaking Around concatMap: Efficient Combinators for Dynamic Programming. Proceedings of the 17th ACM SIGPLAN international conference on Functional programming. New York, NY, USA: ACM. web pdf

  2. Ronny Lorenz, Stephan H. Bernhart, Fabian Externbrink, Jing Qin, Christian Höner zu Siederdissen, Fabian Amman, Ivo L. Hofacker, and Peter F. Stadler. 2012. RNA Folding Algorithms with G-Quadruplexes. Ed. M. C. P. De Souto and M. G. Kann. Brazilian Symposium on Bioinformatics (BSB 2012), Lecture Notes in Bioinformatics. Springer, Heidelberg. web

  3. Conrad Helm, Stephan H. Bernhart, Christian Höner zu Siederdissen, Birgit Nickel, and Christoph Bleidorn. 2012. Deep sequencing of small RNAs confirms an annelid affinity of Myzostomida. Molecular Phylogenetics and Evolution 64, no. 1: 198–203. web

2011

  1. Ronny Lorenz, Stephan H. Bernhart, Christian Höner zu Siederdissen, Hakim Tafer, Christoph Flamm, Peter F. Stadler, and Ivo L. Hofacker. 2011. ViennaRNA Package 2.0. Algorithms for Molecular Biology 6. open access

  2. Christian Höner zu Siederdissen, Stephan H. Bernhart, Peter F. Stadler, and Ivo L. Hofacker. 2011. A folding algorithm for extended RNA secondary structures. Bioinformatics 27: 129–36. open access

  3. Manja Marz, Andreas R. Gruber, Christian Höner zu Siederdissen, Fabian Amman, Stefan Badelt, Sebastian Bartschat, Stephan H. Bernhart, Wolfgang Beyer, Stefanie Kehr, Ronny Lorenz, Andrea Tanzer, Dilmurat Yusuf, Hakim Tafer, Ivo L. Hofacker, and Peter F. Stadler. 2011. Animal snoRNAs and scaRNAs with exceptional structures. RNA Biology 8: 1–9. open access

  4. Robert Giegerich, and Christian Höner zu Siederdissen. 2011. Semantics and Ambiguity of Stochastic RNA Family Models. IEEE/ACM Transactions on Computational Biology and Bioinformatics 8: 499–516. (accepted 2009) web pdf

  5. Matthias Hackl, Tobias Jakobi, Jochen Blom, Daniel Doppmeier, Karina Brinkrolf, Rafael Szczepanowski, Stephan H. Bernhart, Christian Höner zu Siederdissen, Juan A. Hernandez Bort, Matthias Wieser, Renate Kunert, Simon Jeffs, Ivo L. Hofacker, Alexander Goesmann, Alfred Pühler, Nicole Borth, and Johannes Grillari. 2011. Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: identification, annotation and profiling of microRNAs as targets for cellular engineering. Journal of Biotechnology 153: 62–75. open access

2010

  1. Christian Höner zu Siederdissen, and Ivo L. Hofacker. 2010. Discriminatory power of RNA family models. Bioinformatics 26: 453–59. open access

2007

  1. Christian Höner zu Siederdissen. 2007. Determination of the Sum Formula for Small Molecules from High Resolution FT-ICR Spectra.

  2. Christian Höner zu Siederdissen, Susanne Ragg, and Sven Rahmann. 2007. Discovering Biomarkers for Myocardial Infarction from SELDI-TOF Spectra. In Advances in Data Analysis, ed. Reinhold Decker and Hans -J Lenz, 569–76. Springer Berlin Heidelberg.