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2 Folding Routines
mfe Fold
: Calculating Minimum Free Energy Structures
PF Fold
: Calculating Partition Functions and Pair Probabilities
Inverse Fold
: Searching for Predefined Structures
Suboptimal folding
: Enumerating Suboptimal Structures
Cofolding
: Folding of 2 RNA molecules
Local Fold
: Predicting local structures of large sequences
Alignment Fold
: Predicting Consensus Structures from Alignment
Fold Vars
: Global Variables for the Folding Routines
Param Files
: Reading Energy Parameters from File