Function Index

• **pf_interact: Cofolding
• *centroid: PF Fold
• *pf_unstru: Cofolding
• add_root: Parsing
• alifold: Alignment Fold
• alipf_fold: Alignment Fold
• b2C: Parsing
• b2HIT: Parsing
• b2Shapiro: Parsing
• bp_distance: Distances
• co_pf_fold: Cofolding
• cofold: Cofolding
• compute_probabilities: Cofolding
• energy_of_struct: mfe Fold
• expand_Full: Parsing
• expand_Shapiro: Parsing
• fold: mfe Fold
• free_alifold_arrays: Alignment Fold
• free_arrays: mfe Fold
• free_co_arrays: Cofolding
• free_co_pf_arrays: Cofolding
• free_pf_arrays: PF Fold
• free_pf_arraysLP: Local Fold
• free_pf_two: Cofolding
• free_profile: Profile Distances
• free_tree: Tree Distances
• free_unpaired: Cofolding
• get_line: Utilities
• gmlRNA: Utilities
• hamming: Utilities
• init_co_pf_fold: Cofolding
• init_pf_fold: PF Fold
• init_pf_foldLP: Local Fold
• initialize_cofold: Cofolding
• initialize_fold: mfe Fold
• int_urn: Utilities
• inverse_fold: Inverse Fold
• inverse_pf_fold: Inverse Fold
• Lfold: Local Fold
• Make_bp_profile: Profile Distances
• make_pair_table: Utilities
• Make_swString: String Distances
• make_tree: Tree Distances
• mean_bp_dist: PF Fold
• nrerror: Utilities
• pack_structure: Utilities
• parse_structure: Parsing
• pf_fold: PF Fold
• plist: Local Fold
• profile_edit_distance: Profile Distances
• PS_dot_plot: Utilities
• PS_rna_plot: Utilities
• PS_rna_plot_a: Utilities
• random_string: Utilities
• read_parameter_file: Param Files
• space: Utilities
• string_edit_distance: String Distances
• struct: Cofolding
• subopt: Suboptimal folding
• svg_RNA_plot: Utilities
• time_stamp: Utilities
• tree_edit_distance: Tree Distances
• unexpand_aligned_F: Parsing
• unexpand_Full: Parsing
• unpack_structure: Utilities
• unweight: Parsing
• update_alifold_params: Alignment Fold
• update_fold_params: mfe Fold
• update_pf_params: PF Fold
• update_pf_paramsLP: Local Fold
• urn: Utilities
• write_parameter_file: Param Files