RNAPLOT
Vienna RNA (l) Return to Main Contents
NAME
RNAplot - Draw RNA Secondary Structures
SYNOPSIS
RNAplot [-t 0|1]
[-o ps|gml|xrna|svg] [--pre string] [--post
string]
DESCRIPTION
RNAplot reads RNA sequences and structures from stdin in the
format as produced by RNAfold and produces drawings of the
secondary structure graph. The coordinates are produced using
either E. Bruccoleri's naview routines, or a simple radial layout
method.
If the sequence was preceded by a line of the form
> name
the output file will be named "name_ss.ps" otherwise "rna.ps" is
used. Existing files of the same name will be overwritten.
OPTIONS
- -t 0|1
- Choose the layout algorithm. Simple radial layout if 0, or
naview if 1. Default is 1.
- -o ps|gml|xrna|svg
- Specify output format. Available formats are: PostScript (ps),
Graph Meta Language (gml), Scalable Vector Graphics (svg), and XRNA
save file (xrna). Output filenames will end in ".ps" ".gml" ".svg"
".ss", respectively. Default is ps.
- --pre string --post string
- Add annotation macros to postscript file, and add the
postscript code in "string" just before (--pre) or after (--post)
the code to draw the structure. This is an easy way to add
annotation, e.g to mark position 15 with circle use --post "15
cmark"
VERSION
This man page documents version 1.8.5 Vienna RNA Package.
AUTHOR
Ivo L Hofacker
Send comments and bug reports to <rna@tbi.univie.ac.at>
This document was created by man2html,
using the manual pages.
Time: 07:19:16 GMT, February 23, 2011