Maria Waldl
Theoretical Biochemistry Group
Institute for Theoretical Chemistry
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RNALands
RNALands (Fast and Efficient Sampling of Structures in RNA Folding Landscapes) is a joint collaborative project on RNA kinetics involving the French Inria groups AMIB and BONSAI, the Université Paris-Sud, and the Austrian TBI. (FWF-I-1804-N28 and ANR-14-CE34-0011)
Prediction of RNA-RNA Interactions
FWF-I-2874 is a shared project of the Bioinformatics Group at Albert-Ludwigs-University in Freiburg (Germany) and the Austrian TBI that focuses on predicting RNA-RNA interactions.
Publications
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Maria Waldl, Sebastian Will, Michael T. Wolfinger, Ivo L. Hofacker and Peter F. Stadler Bi-Alignments as Models of Incongruent Evolution of RNA Sequence and Secondary Structure In Computational Intelligence Methods for Bioinformatics and Biostatistics. CIBB 2019. Lecture Notes in Computer Science, Springer, Cham, to appear. (extended version) |
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Maria Waldl, Sebastian Will, Michael T. Wolfinger, Ivo L. Hofacker and Peter F. Stadler Bi-Alignments as Models of Incongruent Evolution of RNA Sequence and Secondary Structure In Postproceedings of 16th International Conference on Computational Intelligence methods for Bioinformatics and Biostatistics (CIBB’19), Bergamo, Italy, to appear. doi:10.1101/631606 (biorxiv) |
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Maria Waldl, Bernhard C. Thiel, Roman Ochsenreiter, Alexander Holzenleiter, João Victor de Araujo
Oliveira, Maria Emı́lia M. T. Walter, Michael T. Wolfinger and Peter F. Stadler TERribly Difficult: Searching for Telomerase RNAs in Saccharomycetes Genes 2018, 9, 372, 2018. doi:10.3390/genes9080372 |
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Kinetics of RNA Structure Formation - Folding Pathways and Evolution Master's Thesis (2017) Supervisors: Andrea Tanzer, Ivo Hofacker |
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Maria Waldl, Markus Oppel and Leticia González Controlling the Excited-State Dynamics of Nuclear Spin Isomers Using the Dynamic Stark Effect J. Phys. Chem. A, Article ASAP, 2016. doi:10.1021/acs.jpca.5b12542 |
Selected Talks & Posters
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Bi-alignments as Models of Incongruent Evolution of RNA Sequence and Structure 17th Herbstseminar Bioinformatik in Doubice, Czech Republic (2019) Talk |
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Maria Waldl, Irene K. Beckmann, Sebastian Will, Ivo L. Hofacker Fast Analysis of RNA-RNA Interaction Kinetics for Refining RNA Targeting Screens Austrian-Swiss RNA Retreat 2019 in Hof bei Salzburg, Austria (2019) Poster |
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RNA folding: Structural alignment of kinetic trajectories reveals conserved transient
structures 34nd TBI Winterseminar in Bled, Slovenia (2019) Talk |
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Maria Waldl, Sebastian Will, Ivo L. Hofacker RNA-RNA Interaction Kinetics for Refining RNA Targeting Screens German Conference on Bioinformatics in Vienna, Austria (2018) Poster |
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Predicting RNA-RNA Interactions - A Kinetic Approach 33nd TBI Winterseminar in Bled, Slovenia (2018) Talk |
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Kinetics of RNA-RNA Interactions 15th Herbstseminar Bioinformatik in Doubice, Czech Republic (2017) Talk |
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Maria Waldl, Ronny Lorenz, Ivo Hofacker, Andrea Tanzer, Yann Ponty Conservation in RNA Folding Trajectories RNA Retreat in Neuhofen an der Ybbs, Austria (2017) Poster |
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Homology in RNA Folding Trajectories 32nd TBI Winterseminar in Bled, Slovenia (2017) Talk |
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Compiling Data Sets from RNA Kinetic Simulations 31st TBI Winterseminar in Bled, Slovenia (2016) Talk |
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Maria Waldl, Markus Oppel, Leticia González Exploiting the Dynamic Stark Effect to discriminate Nuclear Spin Isomers 50th Symposium on Theoretical Chemistry in Vienna, Austria (2014) Poster |
Teaching
TA for 270231 VO+SE+UE Mathematik für ChemikerInnen (2013W + 2014W)
TA for 301632 UE Exercises for Foundations of Bioinformatics (2017W)