RNAlib-2.0.0
H/subopt.h
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00001 /* subopt.h */
00002 #ifndef __VIENNA_RNA_PACKAGE_SUBOPT_H__
00003 #define __VIENNA_RNA_PACKAGE_SUBOPT_H__
00004 
00005 #include "data_structures.h"
00006 
00007 #define MAXDOS 1000
00008 
00029 SOLUTION *subopt (char *seq,
00030                   char *sequence,
00031                   int delta,
00032                   FILE *fp);
00033 
00046 SOLUTION *subopt_circ ( char *seq,
00047                         char *sequence,
00048                         int delta,
00049                         FILE *fp);
00050 
00054 extern  int     subopt_sorted;
00055 
00056 extern  int     density_of_states[MAXDOS+1];
00057 
00061 extern  double  print_energy;
00062 
00063 #endif
00064 /* End of file */