RNAlib-2.0.0
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00001 /* subopt.h */ 00002 #ifndef __VIENNA_RNA_PACKAGE_SUBOPT_H__ 00003 #define __VIENNA_RNA_PACKAGE_SUBOPT_H__ 00004 00005 #include "data_structures.h" 00006 00007 #define MAXDOS 1000 00008 00029 SOLUTION *subopt (char *seq, 00030 char *sequence, 00031 int delta, 00032 FILE *fp); 00033 00046 SOLUTION *subopt_circ ( char *seq, 00047 char *sequence, 00048 int delta, 00049 FILE *fp); 00050 00054 extern int subopt_sorted; 00055 00056 extern int density_of_states[MAXDOS+1]; 00057 00061 extern double print_energy; 00062 00063 #endif 00064 /* End of file */