RNAlib-2.0.5
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00001 #ifndef __VIENNA_RNA_PACKAGE_ALI_PLEX_H__ 00002 #define __VIENNA_RNA_PACKAGE_ALI_PLEX_H__ 00003 00004 #include "data_structures.h" 00008 duplexT** aliLduplexfold( const char *s1[], 00009 const char *s2[], 00010 const int threshold, 00011 const int extension_cost, 00012 const int alignment_length, 00013 const int delta, 00014 const int fast, 00015 const int il_a, 00016 const int il_b, 00017 const int b_a, 00018 const int b_b); 00022 duplexT** aliLduplexfold_XS(const char* s1[], 00023 const char* s2[], 00024 const int **access_s1, 00025 const int **access_s2, 00026 const int threshold, 00027 const int alignment_length, 00028 const int delta, 00029 const int fast, 00030 const int il_a, 00031 const int il_b, 00032 const int b_a, 00033 const int b_b); 00034 00035 /* 00036 extern duplexT aliduplexfold(const char *s1[], const char *s2[], const int extension_cost); 00037 extern duplexT aliduplexfold_XS(const char *s1[], const char *s2[],const int **access_s1, 00038 const int **access_s2, const int i_pos, const int j_pos, const int threshold); 00039 */ 00040 #endif