Version 1.0pre ============== - RNAz reads MAF alignments in addition to CLUSTAL W format. - RNAz reads and processes alignments from the input until an "end of file" signal is reached. In other words, you can feed as many alignments to RNAz as you want. This speeds up analysis since initialization has only be done once. - A set of Perl programs is provided which automatize the pre-processing of alignments and thus make large scale screens easier. - A manual/tutorial is available covering all aspects of using RNAz and interpreting the results. - No environment variable is needed any longer making installation easier. - A Windows installer is available. - As an experimental feature, an additional SVM was added to guess the correct strand of a hit (thanks to Kristin Missal). - Bugs have been fixed, most notably the strange problem with mangled output that occured on some systems. Also the uppercase/lowercase problem has been fixed. - The output has been modified. The classification is now named "RNA" and "OTHER" (instead of "no RNA"). The "Combinations/Pair" value was added. The output can optionally be displayed with gaps, allowing to recover the complete input alignment from the RNAz output. Version 0.1.1 ============= First publicly available version, so everything is new... -- $Id: NEWS,v 1.5 2006/03/26 12:52:17 wash Exp $