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ViennaRNA

  • Get Started
  • User Guide
  • RNAlib User Guide
  • RNAlib API Reference
    • What's new
    • Changelog
    • Bibliography
    • Citation
    • FAQ
    • Contributing
    • About
    • License
  • Github
  • PyPI
  • Bioconda
  • Get Started
  • User Guide
  • RNAlib User Guide
  • RNAlib API Reference
  • What's new
  • Changelog
  • Bibliography
  • Citation
  • FAQ
  • Contributing
  • About
  • License
  • Github
  • PyPI
  • Bioconda

Section Navigation

User Guides and Tutorials

  • Command-Line Tools
  • Manpages
    • RNA2Dfold
    • RNAaliduplex
    • RNAalifold
    • RNAcofold
    • RNAdistance
    • RNAdos
    • RNAduplex
    • RNAeval
    • RNAfold
    • RNAheat
    • RNAinverse
    • RNALalifold
    • RNALfold
    • RNAmultifold
    • RNApaln
    • RNAparconv
    • RNApdist
    • RNAPKplex
    • RNAplex
    • RNAplfold
    • RNAplot
    • RNApvmin
    • RNAsnoop
    • RNAsubopt
    • RNAup
  • I/O Formats
    • RNA Structures
    • Multiple Sequence Alignments (MSA)
    • Command Files
    • Energy Parameters
  • Tutorials
    • The Program RNAfold
    • The Program RNApvmin
    • The Program RNAsubopt
    • The Program RNAalifold
    • The Program RNAcofold
    • The Program RNAduplex
    • The Program RNAplot
    • The Program RNAinverse
    • The Program switch.pl
    • The Program RNA2Dfold
    • The Programs barriers and treekin
  • User Guide
  • I/O Formats

I/O Formats#

Below, you’ll find a listing of different sections that introduce the most common notations of sequence and structure data, specifications of bioinformatics sequence and structure file formats, and various output file formats produced by our library.

Contents:

  • RNA Structures
  • Multiple Sequence Alignments (MSA)
  • Command Files
  • Energy Parameters

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RNA Structures

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