Files
ViennaRNA/mfe.h
Basic global MFE prediction interface
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float vrna_mfe(vrna_fold_compound_t *fc, char *structure)
- #include <ViennaRNA/mfe.h>
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float vrna_mfe_dimer(vrna_fold_compound_t *fc, char *structure)
- #include <ViennaRNA/mfe.h>
Simplified global MFE prediction using sequence(s) or multiple sequence alignment(s)
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float vrna_fold(const char *sequence, char *structure)
- #include <ViennaRNA/mfe.h>
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float vrna_circfold(const char *sequence, char *structure)
- #include <ViennaRNA/mfe.h>
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float vrna_alifold(const char **sequences, char *structure)
- #include <ViennaRNA/mfe.h>
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float vrna_circalifold(const char **sequences, char *structure)
- #include <ViennaRNA/mfe.h>
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float vrna_cofold(const char *sequence, char *structure)
- #include <ViennaRNA/mfe.h>
Defines
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DEPRECATED(func, msg)
- #include <ViennaRNA/mfe.h>
Functions
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int vrna_backtrack_from_intervals(vrna_fold_compound_t *fc, vrna_bp_stack_t *bp_stack, sect bt_stack[], int s)
- #include <ViennaRNA/mfe.h>
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float vrna_backtrack5(vrna_fold_compound_t *fc, unsigned int length, char *structure)
- #include <ViennaRNA/mfe.h>
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int vrna_backtrack_window(vrna_fold_compound_t *fc, const char *Lfold_filename, long file_pos, char **structure, double mfe)
- #include <ViennaRNA/mfe.h>