RNAlib-2.0.1
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00001 #ifndef __VIENNA_RNA_PACKAGE_LPFOLD_H__ 00002 #define __VIENNA_RNA_PACKAGE_LPFOLD_H__ 00003 00004 #include "data_structures.h" 00005 00006 #ifdef __GNUC__ 00007 #define DEPRECATED(func) func __attribute__ ((deprecated)) 00008 #else 00009 #define DEPRECATED(func) func 00010 #endif 00011 00023 void update_pf_paramsLP(int length); 00024 00059 plist *pfl_fold(char *sequence, 00060 int winSize, 00061 int pairSize, 00062 float cutoffb, 00063 double **pU, 00064 struct plist **dpp2, 00065 FILE *pUfp, 00066 FILE *spup); 00067 00079 void putoutpU_prob(double **pU, 00080 int length, 00081 int ulength, 00082 FILE *fp, 00083 int energies); 00084 00096 void putoutpU_prob_bin(double **pU, 00097 int length, 00098 int ulength, 00099 FILE *fp, 00100 int energies); 00101 00107 DEPRECATED(void init_pf_foldLP(int length)); 00108 00109 #endif