RNAlib-2.0.2
H/Lfold.h File Reference

Predicting local MFE structures of large sequences. More...

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Functions

float Lfold (const char *string, char *structure, int maxdist)
 The local analog to fold().
float aliLfold (const char **strings, char *structure, int maxdist)
float Lfoldz (const char *string, char *structure, int maxdist, int zsc, double min_z)

Detailed Description

Predicting local MFE structures of large sequences.


Function Documentation

float Lfold ( const char *  string,
char *  structure,
int  maxdist 
)

The local analog to fold().

Computes the minimum free energy structure including only base pairs with a span smaller than 'maxdist'

Parameters:
string
structure
maxdist
float aliLfold ( const char **  strings,
char *  structure,
int  maxdist 
)
Parameters:
strings
structure
maxdist
Returns:
float Lfoldz ( const char *  string,
char *  structure,
int  maxdist,
int  zsc,
double  min_z 
)
Parameters:
string
structure
maxdist
zsc
min_z