RNAlib-2.0.4
H/duplex.h
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00001 #ifndef __VIENNA_RNA_PACKAGE_DUPLEX_H__
00002 #define __VIENNA_RNA_PACKAGE_DUPLEX_H__
00003 
00004 #include "data_structures.h"
00005 
00012 duplexT duplexfold( const char *s1,
00013                     const char *s2);
00014 
00015 duplexT *duplex_subopt( const char *s1,
00016                         const char *s2,
00017                         int delta,
00018                         int w);
00019 
00020 duplexT aliduplexfold(const char *s1[],
00021                       const char *s2[]);
00022 
00023 duplexT *aliduplex_subopt(const char *s1[],
00024                           const char *s2[],
00025                           int delta,
00026                           int w);
00027 
00028 #endif