RNAlib-2.0.5
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00001 /* subopt.h */ 00002 #ifndef __VIENNA_RNA_PACKAGE_SUBOPT_H__ 00003 #define __VIENNA_RNA_PACKAGE_SUBOPT_H__ 00004 00005 #include "data_structures.h" 00006 00007 #define MAXDOS 1000 00008 00029 SOLUTION *subopt (char *seq, 00030 char *sequence, 00031 int delta, 00032 FILE *fp); 00033 00034 SOLUTION *subopt_par( char *seq, 00035 char *structure, 00036 paramT *parameters, 00037 int delta, 00038 int is_constrained, 00039 int is_circular, 00040 FILE *fp); 00041 00054 SOLUTION *subopt_circ ( char *seq, 00055 char *sequence, 00056 int delta, 00057 FILE *fp); 00058 00062 extern int subopt_sorted; 00063 00064 extern int density_of_states[MAXDOS+1]; 00065 00069 extern double print_energy; 00070 00071 #endif 00072 /* End of file */