RNAlib-2.0.6
H/subopt.h
Go to the documentation of this file.
00001 /* subopt.h */
00002 #ifndef __VIENNA_RNA_PACKAGE_SUBOPT_H__
00003 #define __VIENNA_RNA_PACKAGE_SUBOPT_H__
00004 
00005 #include "data_structures.h"
00006 
00007 #define MAXDOS 1000
00008 
00029 SOLUTION *subopt (char *seq,
00030                   char *sequence,
00031                   int delta,
00032                   FILE *fp);
00033 
00034 SOLUTION *subopt_par( char *seq,
00035                       char *structure,
00036                       paramT *parameters,
00037                       int delta,
00038                       int is_constrained,
00039                       int is_circular,
00040                       FILE *fp);
00041 
00054 SOLUTION *subopt_circ ( char *seq,
00055                         char *sequence,
00056                         int delta,
00057                         FILE *fp);
00058 
00062 extern  int     subopt_sorted;
00063 
00064 extern  int     density_of_states[MAXDOS+1];
00065 
00069 extern  double  print_energy;
00070 
00071 #endif
00072 /* End of file */