1 #ifndef __VIENNA_RNA_PACKAGE_COFOLD_H__
2 #define __VIENNA_RNA_PACKAGE_COFOLD_H__
7 #define DEPRECATED(func) func __attribute__ ((deprecated))
9 #define DEPRECATED(func) func
65 float cofold(
const char *sequence,
87 void update_cofold_params_par(
paramT *parameters);
void update_cofold_params(void)
Recalculate parameters.
void export_cofold_arrays(int **f5_p, int **c_p, int **fML_p, int **fM1_p, int **fc_p, int **indx_p, char **ptype_p)
Export the arrays of partition function cofold.
The datastructure that contains temperature scaled energy parameters.
Definition: data_structures.h:126
void get_monomere_mfes(float *e1, float *e2)
get_monomer_free_energies
void export_cofold_arrays_gq(int **f5_p, int **c_p, int **fML_p, int **fM1_p, int **fc_p, int **ggg_p, int **indx_p, char **ptype_p)
Export the arrays of partition function cofold (with gquadruplex support)
Solution element from subopt.c.
Definition: data_structures.h:252
All datastructures and typedefs shared among the Vienna RNA Package can be found here.
void free_co_arrays(void)
Free memory occupied by cofold()
float cofold_par(const char *string, char *structure, paramT *parameters, int is_constrained)
Compute the minimum free energy of two interacting RNA molecules.
SOLUTION * zukersubopt(const char *string)
Compute Zuker type suboptimal structures.
float cofold(const char *sequence, char *structure)
Compute the minimum free energy of two interacting RNA molecules.
SOLUTION * zukersubopt_par(const char *string, paramT *parameters)
Compute Zuker type suboptimal structures.
void initialize_cofold(int length)