RNAlib-2.3.5
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Partition function implementation for the Lfold algorithm. More...
Go to the source code of this file.
Macros | |
#define | VRNA_PROBS_WINDOW_BPP 4096U |
Option flag to activate callback triggers for pairing probabilities. More... | |
#define | VRNA_PROBS_WINDOW_UP 8192U |
Option flag to activate callback triggers for unpaired probabilities. More... | |
#define | VRNA_PROBS_WINDOW_STACKP 16384U |
Option flag to activate callback triggers for stacking probabilities. More... | |
#define | VRNA_PROBS_WINDOW_UP_SPLIT 32768U |
Option flag to activate callback triggers for unpaired probabilities (split up into different loop types) More... | |
Functions | |
vrna_plist_t * | vrna_pfl_fold (const char *sequence, int window_size, int max_bp_span, float cutoff) |
Compute base pair probabilities using a sliding-window approach. More... | |
void | vrna_pfl_fold_cb (const char *sequence, int window_size, int max_bp_span, vrna_probs_window_callback *cb, void *data) |
Compute base pair probabilities using a sliding-window approach (callback version) More... | |
double ** | vrna_pfl_fold_up (const char *sequence, int ulength, int window_size, int max_bp_span) |
Compute probability of contiguous unpaired segments. More... | |
void | vrna_pfl_fold_up_cb (const char *sequence, int ulength, int window_size, int max_bp_span, vrna_probs_window_callback *cb, void *data) |
Compute probability of contiguous unpaired segments. More... | |
void | vrna_probs_window (vrna_fold_compound_t *fc, int ulength, vrna_probs_window_callback *cb, void *data, unsigned int options) |
Compute various equilibrium probabilities under a sliding window approach. More... | |
Partition function implementation for the Lfold algorithm.