1 #ifndef VIENNA_RNA_PACKAGE_WALK_H 2 #define VIENNA_RNA_PACKAGE_WALK_H 25 #define VRNA_PATH_STEEPEST_DESCENT 128 31 #define VRNA_PATH_RANDOM 256 37 #define VRNA_PATH_NO_TRANSITION_OUTPUT 512 44 #define VRNA_PATH_DEFAULT (VRNA_PATH_STEEPEST_DESCENT | VRNA_MOVESET_DEFAULT) 78 unsigned int options);
105 unsigned int options);
134 unsigned int options);
The most basic data structure required by many functions throughout the RNAlib.
Definition: data_structures.h:463
Methods to compute the neighbors of an RNA secondary structure.
vrna_move_t * vrna_path_gradient(vrna_fold_compound_t *vc, short *pt, unsigned int options)
Compute a steepest descent / gradient path, store the final structure, and return a list of transitio...
Various data structures and pre-processor macros.
vrna_move_t * vrna_path_random(vrna_fold_compound_t *vc, short *pt, unsigned int steps, unsigned int options)
Generate a random walk / path of a given length, store the final structure, and return a list of tran...
vrna_move_t * vrna_path(vrna_fold_compound_t *vc, short *pt, unsigned int steps, unsigned int options)
Compute a path, store the final structure, and return a list of transition moves from the start to th...
An atomic representation of the transition / move from one structure to its neighbor.
Definition: neighbor.h:151