1 #ifndef VIENNA_RNA_PACKAGE_LFOLD_H 2 #define VIENNA_RNA_PACKAGE_LFOLD_H 11 #define VRNA_BACKWARD_COMPAT 13 #ifdef VRNA_WARN_DEPRECATED 15 # define DEPRECATED(func) func __attribute__ ((deprecated)) 17 # define DEPRECATED(func) func 20 # define DEPRECATED(func) func 55 vrna_Lfold_cb(
const char *
string,
97 vrna_Lfoldz_cb(
const char *
string,
100 vrna_mfe_window_zscore_callback *cb,
114 float vrna_aliLfold(
const char **AS,
119 float vrna_aliLfold_cb(
const char **AS,
125 #ifdef VRNA_BACKWARD_COMPAT 137 DEPRECATED(
float Lfold(
const char *
string,
148 DEPRECATED(
float Lfoldz(
const char *
string,
169 float aliLfold_cb(
const char **AS,
void( vrna_mfe_window_callback)(int start, int end, const char *structure, float en, void *data)
The default callback for sliding window MFE structure predictions.
Definition: mfe.h:25
float Lfoldz(const char *string, char *structure, int maxdist, int zsc, double min_z)
float vrna_Lfoldz(const char *string, int window_size, double min_z, FILE *file)
Local MFE prediction using a sliding window approach with z-score cut-off (simplified interface) ...
float aliLfold(const char **AS, char *structure, int maxdist)
MFE calculations for single RNA sequences.
float vrna_Lfold(const char *string, int window_size, FILE *file)
Local MFE prediction using a sliding window approach (simplified interface)
float Lfold(const char *string, char *structure, int maxdist)
The local analog to fold().