multibranch_loops.h File Reference

Energy evaluation of multibranch loops for MFE and partition function calculations. More...

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Data Structures
struct	vrna_mx_pf_aux_ml_t
	Auxiliary helper arrays for fast exterior loop computations. More...

Functions
int	vrna_E_mb_loop_stack (vrna_fold_compound_t *vc, int i, int j)
	Evaluate energy of a multi branch helices stacking onto closing pair (i,j) More...
int	vrna_BT_mb_loop (vrna_fold_compound_t *vc, int *i, int *j, int *k, int en, int *component1, int *component2)
	Backtrack the decomposition of a multi branch loop closed by . More...

Detailed Description

Energy evaluation of multibranch loops for MFE and partition function calculations.