RNAlib-2.4.5
- b -
BONUS :
energy_const.h
VRNA_BRACKETS_ALPHA :
structure_utils.h
VRNA_BRACKETS_ANG :
structure_utils.h
VRNA_BRACKETS_CLY :
structure_utils.h
VRNA_BRACKETS_DEFAULT :
structure_utils.h
VRNA_BRACKETS_RND :
structure_utils.h
VRNA_BRACKETS_SQR :
structure_utils.h
- c -
VRNA_CMD_PARSE_DEFAULTS :
commands.h
VRNA_CMD_PARSE_HC :
commands.h
VRNA_CMD_PARSE_SC :
commands.h
VRNA_CMD_PARSE_SD :
commands.h
VRNA_CMD_PARSE_UD :
commands.h
VRNA_CONSTRAINT_CONTEXT_ALL_LOOPS :
constraints_hard.h
VRNA_CONSTRAINT_CONTEXT_CLOSING_LOOPS :
constraints_hard.h
VRNA_CONSTRAINT_CONTEXT_ENCLOSED_LOOPS :
constraints_hard.h
VRNA_CONSTRAINT_CONTEXT_ENFORCE :
constraints_hard.h
VRNA_CONSTRAINT_CONTEXT_EXT_LOOP :
constraints_hard.h
VRNA_CONSTRAINT_CONTEXT_HP_LOOP :
constraints_hard.h
VRNA_CONSTRAINT_CONTEXT_INT_LOOP :
constraints_hard.h
VRNA_CONSTRAINT_CONTEXT_INT_LOOP_ENC :
constraints_hard.h
VRNA_CONSTRAINT_CONTEXT_MB_LOOP :
constraints_hard.h
VRNA_CONSTRAINT_CONTEXT_MB_LOOP_ENC :
constraints_hard.h
VRNA_CONSTRAINT_CONTEXT_NO_REMOVE :
constraints_hard.h
VRNA_CONSTRAINT_CONTEXT_NONE :
constraints_hard.h
VRNA_CONSTRAINT_DB :
constraints_hard.h
VRNA_CONSTRAINT_DB_ANG_BRACK :
constraints_hard.h
VRNA_CONSTRAINT_DB_DEFAULT :
constraints_hard.h
VRNA_CONSTRAINT_DB_DOT :
constraints_hard.h
VRNA_CONSTRAINT_DB_ENFORCE_BP :
constraints_hard.h
VRNA_CONSTRAINT_DB_GQUAD :
constraints_hard.h
VRNA_CONSTRAINT_DB_INTERMOL :
constraints_hard.h
VRNA_CONSTRAINT_DB_INTRAMOL :
constraints_hard.h
VRNA_CONSTRAINT_DB_PIPE :
constraints_hard.h
VRNA_CONSTRAINT_DB_RND_BRACK :
constraints_hard.h
VRNA_CONSTRAINT_DB_WUSS :
constraints_hard.h
VRNA_CONSTRAINT_DB_X :
constraints_hard.h
VRNA_CONSTRAINT_FILE :
constraints.h
VRNA_CONSTRAINT_MULTILINE :
file_formats.h
VRNA_CONSTRAINT_NO_HEADER :
constraints_hard.h
VRNA_CONSTRAINT_SOFT_MFE :
constraints.h
VRNA_CONSTRAINT_SOFT_PF :
constraints.h
VRNA_CONVERT_OUTPUT_ALL :
convert_epars.h
VRNA_CONVERT_OUTPUT_BULGE :
convert_epars.h
VRNA_CONVERT_OUTPUT_DANGLE3 :
convert_epars.h
VRNA_CONVERT_OUTPUT_DANGLE5 :
convert_epars.h
VRNA_CONVERT_OUTPUT_DUMP :
convert_epars.h
VRNA_CONVERT_OUTPUT_HP :
convert_epars.h
VRNA_CONVERT_OUTPUT_INT :
convert_epars.h
VRNA_CONVERT_OUTPUT_INT_11 :
convert_epars.h
VRNA_CONVERT_OUTPUT_INT_21 :
convert_epars.h
VRNA_CONVERT_OUTPUT_INT_22 :
convert_epars.h
VRNA_CONVERT_OUTPUT_MISC :
convert_epars.h
VRNA_CONVERT_OUTPUT_ML :
convert_epars.h
VRNA_CONVERT_OUTPUT_MM_EXT :
convert_epars.h
VRNA_CONVERT_OUTPUT_MM_HP :
convert_epars.h
VRNA_CONVERT_OUTPUT_MM_INT :
convert_epars.h
VRNA_CONVERT_OUTPUT_MM_INT_1N :
convert_epars.h
VRNA_CONVERT_OUTPUT_MM_INT_23 :
convert_epars.h
VRNA_CONVERT_OUTPUT_MM_MULTI :
convert_epars.h
VRNA_CONVERT_OUTPUT_NINIO :
convert_epars.h
VRNA_CONVERT_OUTPUT_SPECIAL_HP :
convert_epars.h
VRNA_CONVERT_OUTPUT_STACK :
convert_epars.h
VRNA_CONVERT_OUTPUT_VANILLA :
convert_epars.h
- d -
VRNA_DECOMP_EXT_EXT :
constraints.h
VRNA_DECOMP_EXT_EXT_EXT :
constraints.h
VRNA_DECOMP_EXT_EXT_STEM :
constraints.h
VRNA_DECOMP_EXT_EXT_STEM1 :
constraints.h
VRNA_DECOMP_EXT_STEM :
constraints.h
VRNA_DECOMP_EXT_STEM_EXT :
constraints.h
VRNA_DECOMP_EXT_STEM_OUTSIDE :
constraints.h
VRNA_DECOMP_EXT_UP :
constraints.h
VRNA_DECOMP_ML_COAXIAL :
constraints.h
VRNA_DECOMP_ML_COAXIAL_ENC :
constraints.h
VRNA_DECOMP_ML_ML :
constraints.h
VRNA_DECOMP_ML_ML_ML :
constraints.h
VRNA_DECOMP_ML_ML_STEM :
constraints.h
VRNA_DECOMP_ML_STEM :
constraints.h
VRNA_DECOMP_ML_UP :
constraints.h
VRNA_DECOMP_PAIR_HP :
constraints.h
VRNA_DECOMP_PAIR_IL :
constraints.h
VRNA_DECOMP_PAIR_ML :
constraints.h
- f -
FILENAME_ID_LENGTH :
string_utils.h
FILENAME_MAX_LENGTH :
string_utils.h
FORBIDDEN :
energy_const.h
VRNA_FILE_FORMAT_MSA_APPEND :
file_formats_msa.h
VRNA_FILE_FORMAT_MSA_CLUSTAL :
file_formats_msa.h
VRNA_FILE_FORMAT_MSA_DEFAULT :
file_formats_msa.h
VRNA_FILE_FORMAT_MSA_FASTA :
file_formats_msa.h
VRNA_FILE_FORMAT_MSA_MAF :
file_formats_msa.h
VRNA_FILE_FORMAT_MSA_MIS :
file_formats_msa.h
VRNA_FILE_FORMAT_MSA_NOCHECK :
file_formats_msa.h
VRNA_FILE_FORMAT_MSA_QUIET :
file_formats_msa.h
VRNA_FILE_FORMAT_MSA_SILENT :
file_formats_msa.h
VRNA_FILE_FORMAT_MSA_STOCKHOLM :
file_formats_msa.h
VRNA_FILE_FORMAT_MSA_UNKNOWN :
file_formats_msa.h
- g -
GASCONST :
energy_const.h
- i -
INF :
energy_const.h
VRNA_INPUT_BLANK_LINE :
utils.h
VRNA_INPUT_COMMENT :
utils.h
VRNA_INPUT_CONSTRAINT :
utils.h
VRNA_INPUT_ERROR :
utils.h
VRNA_INPUT_FASTA_HEADER :
utils.h
VRNA_INPUT_MISC :
utils.h
VRNA_INPUT_NO_REST :
utils.h
VRNA_INPUT_NO_SPAN :
utils.h
VRNA_INPUT_NO_TRUNCATION :
utils.h
VRNA_INPUT_NOSKIP_BLANK_LINES :
utils.h
VRNA_INPUT_NOSKIP_COMMENTS :
utils.h
VRNA_INPUT_QUIT :
utils.h
- k -
K0 :
energy_const.h
- m -
MAX2 :
utils.h
MAX3 :
utils.h
MAXALPHA :
model.h
MAXDOS :
subopt.h
MAXLOOP :
energy_const.h
MIN2 :
utils.h
MIN3 :
utils.h
VRNA_MEASURE_SHANNON_ENTROPY :
aln_util.h
VRNA_MINIMIZER_CONJUGATE_FR :
perturbation_fold.h
VRNA_MINIMIZER_CONJUGATE_PR :
perturbation_fold.h
VRNA_MINIMIZER_DEFAULT :
perturbation_fold.h
VRNA_MINIMIZER_STEEPEST_DESCENT :
perturbation_fold.h
VRNA_MINIMIZER_VECTOR_BFGS :
perturbation_fold.h
VRNA_MINIMIZER_VECTOR_BFGS2 :
perturbation_fold.h
VRNA_MODEL_DEFAULT_ALI_CV_FACT :
model.h
VRNA_MODEL_DEFAULT_ALI_NC_FACT :
model.h
VRNA_MODEL_DEFAULT_ALI_OLD_EN :
model.h
VRNA_MODEL_DEFAULT_ALI_RIBO :
model.h
VRNA_MODEL_DEFAULT_BACKTRACK :
model.h
VRNA_MODEL_DEFAULT_BACKTRACK_TYPE :
model.h
VRNA_MODEL_DEFAULT_BETA_SCALE :
model.h
VRNA_MODEL_DEFAULT_CIRC :
model.h
VRNA_MODEL_DEFAULT_COMPUTE_BPP :
model.h
VRNA_MODEL_DEFAULT_DANGLES :
model.h
VRNA_MODEL_DEFAULT_ENERGY_SET :
model.h
VRNA_MODEL_DEFAULT_GQUAD :
model.h
VRNA_MODEL_DEFAULT_LOG_ML :
model.h
VRNA_MODEL_DEFAULT_MAX_BP_SPAN :
model.h
VRNA_MODEL_DEFAULT_NO_GU :
model.h
VRNA_MODEL_DEFAULT_NO_GU_CLOSURE :
model.h
VRNA_MODEL_DEFAULT_NO_LP :
model.h
VRNA_MODEL_DEFAULT_PF_SCALE :
model.h
VRNA_MODEL_DEFAULT_SPECIAL_HP :
model.h
VRNA_MODEL_DEFAULT_TEMPERATURE :
model.h
VRNA_MODEL_DEFAULT_UNIQ_ML :
model.h
VRNA_MODEL_DEFAULT_WINDOW_SIZE :
model.h
VRNA_MOVESET_DEFAULT :
neighbor.h
VRNA_MOVESET_DELETION :
neighbor.h
VRNA_MOVESET_INSERTION :
neighbor.h
VRNA_MOVESET_NO_LP :
neighbor.h
VRNA_MOVESET_SHIFT :
neighbor.h
- n -
NBPAIRS :
energy_const.h
- o -
VRNA_OBJECTIVE_FUNCTION_ABSOLUTE :
perturbation_fold.h
VRNA_OBJECTIVE_FUNCTION_QUADRATIC :
perturbation_fold.h
VRNA_OPTION_DEFAULT :
fold_compound.h
VRNA_OPTION_EVAL_ONLY :
fold_compound.h
VRNA_OPTION_HYBRID :
fold_compound.h
VRNA_OPTION_MFE :
fold_compound.h
VRNA_OPTION_MULTILINE :
file_formats.h
VRNA_OPTION_PF :
fold_compound.h
VRNA_OPTION_WINDOW :
fold_compound.h
- p -
VRNA_PATH_DEFAULT :
walk.h
VRNA_PATH_NO_TRANSITION_OUTPUT :
walk.h
VRNA_PATH_RANDOM :
walk.h
VRNA_PATH_STEEPEST_DESCENT :
walk.h
VRNA_PLOT_TYPE_CIRCULAR :
plot_layouts.h
VRNA_PLOT_TYPE_NAVIEW :
plot_layouts.h
VRNA_PLOT_TYPE_SIMPLE :
plot_layouts.h
VRNA_PROBS_WINDOW_BPP :
LPfold.h
VRNA_PROBS_WINDOW_STACKP :
LPfold.h
VRNA_PROBS_WINDOW_UP :
LPfold.h
VRNA_PROBS_WINDOW_UP_SPLIT :
LPfold.h
- s -
STR :
string_utils.h
VRNA_STATUS_MFE_POST :
fold_compound.h
VRNA_STATUS_MFE_PRE :
fold_compound.h
VRNA_STATUS_PF_POST :
fold_compound.h
VRNA_STATUS_PF_PRE :
fold_compound.h
- t -
TURN :
energy_const.h
- u -
VRNA_UNSTRUCTURED_DOMAIN_ALL_LOOPS :
unstructured_domains.h
VRNA_UNSTRUCTURED_DOMAIN_EXT_LOOP :
unstructured_domains.h
VRNA_UNSTRUCTURED_DOMAIN_HP_LOOP :
unstructured_domains.h
VRNA_UNSTRUCTURED_DOMAIN_INT_LOOP :
unstructured_domains.h
VRNA_UNSTRUCTURED_DOMAIN_MB_LOOP :
unstructured_domains.h
VRNA_UNSTRUCTURED_DOMAIN_MOTIF :
unstructured_domains.h
- x -
XSTR :
string_utils.h
Generated on Tue Apr 17 2018 15:37:52 for RNAlib-2.4.5 by
1.8.13