RNAlib-2.4.5
centroid.h
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1 #ifndef VIENNA_RNA_PACKAGE_CENTROID_H
2 #define VIENNA_RNA_PACKAGE_CENTROID_H
3 
6 
7 #ifdef VRNA_WARN_DEPRECATED
8 # if defined(__clang__)
9 # define DEPRECATED(func, msg) func __attribute__ ((deprecated("", msg)))
10 # elif defined(__GNUC__)
11 # define DEPRECATED(func, msg) func __attribute__ ((deprecated(msg)))
12 # else
13 # define DEPRECATED(func, msg) func
14 # endif
15 #else
16 # define DEPRECATED(func, msg) func
17 #endif
18 
39  double *dist);
40 
57 char *vrna_centroid_from_plist(int length,
58  double *dist,
59  vrna_ep_t *pl);
60 
77 char *vrna_centroid_from_probs(int length,
78  double *dist,
79  FLT_OR_DBL *probs);
80 
81 #ifndef VRNA_DISABLE_BACKWARD_COMPATIBILITY
82 
88 DEPRECATED(char *get_centroid_struct_pl(int length,
89  double *dist,
90  vrna_ep_t *pl),
91  "Use vrna_centroid_from_plist() instead");
92 
98 DEPRECATED(char *get_centroid_struct_pr(int length,
99  double *dist,
100  FLT_OR_DBL *pr),
101  "Use vrna_centroid_from_probs() instead");
102 
103 #endif
104 
105 #endif
char * vrna_centroid_from_probs(int length, double *dist, FLT_OR_DBL *probs)
Get the centroid structure of the ensemble.
char * vrna_centroid(vrna_fold_compound_t *vc, double *dist)
Get the centroid structure of the ensemble.
char * get_centroid_struct_pl(int length, double *dist, vrna_ep_t *pl)
Get the centroid structure of the ensemble.
Data structure representing a single entry of an element probability list (e.g. list of pair probabil...
Definition: structure_utils.h:114
double FLT_OR_DBL
Typename for floating point number in partition function computations.
Definition: data_structures.h:43
The most basic data structure required by many functions throughout the RNAlib.
Definition: fold_compound.h:131
char * vrna_centroid_from_plist(int length, double *dist, vrna_ep_t *pl)
Get the centroid structure of the ensemble.
Various data structures and pre-processor macros.
Various utility- and helper-functions for secondary structure parsing, converting, etc.
char * get_centroid_struct_pr(int length, double *dist, FLT_OR_DBL *pr)
Get the centroid structure of the ensemble.
FLT_OR_DBL * pr
A pointer to the base pair probability matrix.