2#ifndef __VIENNA_RNA_PACKAGE_SUBOPT_H__
3#define __VIENNA_RNA_PACKAGE_SUBOPT_H__
All datastructures and typedefs shared among the Vienna RNA Package can be found here.
#define MAXDOS
Maximum density of states discretization for subopt.
Definition data_structures.h:28
int density_of_states[MAXDOS+1]
The Density of States.
SOLUTION * subopt_par(char *seq, char *structure, paramT *parameters, int delta, int is_constrained, int is_circular, FILE *fp)
Returns list of subopt structures or writes to fp.
double print_energy
printing threshold for use with logML
SOLUTION * subopt_circ(char *seq, char *sequence, int delta, FILE *fp)
Returns list of circular subopt structures or writes to fp.
int subopt_sorted
Sort output by energy.
SOLUTION * subopt(char *seq, char *structure, int delta, FILE *fp)
Returns list of subopt structures or writes to fp.
Solution element from subopt.c.
Definition data_structures.h:318
The datastructure that contains temperature scaled energy parameters.
Definition data_structures.h:122