RNAlib-2.1.9h
ali_plex.h
1#ifndef __VIENNA_RNA_PACKAGE_ALI_PLEX_H__
2#define __VIENNA_RNA_PACKAGE_ALI_PLEX_H__
3
4#include "data_structures.h"
8duplexT** aliLduplexfold( const char *s1[],
9 const char *s2[],
10 const int threshold,
11 const int extension_cost,
12 const int alignment_length,
13 const int delta,
14 const int fast,
15 const int il_a,
16 const int il_b,
17 const int b_a,
18 const int b_b);
22duplexT** aliLduplexfold_XS(const char* s1[],
23 const char* s2[],
24 const int **access_s1,
25 const int **access_s2,
26 const int threshold,
27 const int alignment_length,
28 const int delta,
29 const int fast,
30 const int il_a,
31 const int il_b,
32 const int b_a,
33 const int b_b);
34
35/*
36extern duplexT aliduplexfold(const char *s1[], const char *s2[], const int extension_cost);
37extern duplexT aliduplexfold_XS(const char *s1[], const char *s2[],const int **access_s1,
38const int **access_s2, const int i_pos, const int j_pos, const int threshold);
39*/
40#endif
All datastructures and typedefs shared among the Vienna RNA Package can be found here.
Definition data_structures.h:481