RNAlib-2.1.9h
dist_vars.h
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1#ifndef __VIENNA_RNA_PACKAGE_DIST_VARS_H__
2#define __VIENNA_RNA_PACKAGE_DIST_VARS_H__
3
15extern int edit_backtrack;
16
21extern char *aligned_line[4];
22
29extern int cost_matrix;
30
31/* Global type defs for Distance-Package */
32
33typedef struct {
34 int type;
35 int weight;
36 int father;
37 int sons;
38 int leftmostleaf;
40
41typedef struct {
42 Postorder_list *postorder_list;
43 int *keyroots;
44 } Tree;
45
46typedef struct {
47 int type;
48 int sign;
49 float weight;
50 } swString;
51#endif
int edit_backtrack
Produce an alignment of the two structures being compared by tracing the editing path giving the mini...
int cost_matrix
Specify the cost matrix to be used for distance calculations.
char * aligned_line[4]
Contains the two aligned structures after a call to one of the distance functions with edit_backtrack...
Definition dist_vars.h:33
Definition dist_vars.h:41
Definition dist_vars.h:46