2#ifndef __VIENNA_RNA_PACKAGE_SNOFOLD_H__
3#define __VIENNA_RNA_PACKAGE_SNOFOLD_H__
12int snofold(
const char *sequence,
19 const int max_half_stem);
24void snofree_arrays(
const int length);
25void snoinitialize_fold(
int length);
26void snoupdate_fold_params(
void);
27int snoloop_energy(
short *ptable,
31void snoexport_fold_arrays(
int **indx_p,
36char * snobacktrack_fold_from_pair(
const char *sequence,
40float alisnofold(
const char **strings,
46 const int max_half_stem);
47void alisnofree_arrays(
const int length);
48char *alisnobacktrack_fold_from_pair(
const char **sequence,
All datastructures and typedefs shared among the Vienna RNA Package can be found here.
double nc_fact
This variable controls the magnitude of the penalty for non-compatible sequences in the covariance te...
double cv_fact
This variable controls the weight of the covariance term in the energy function of alignment folding ...
Definition data_structures.h:509