RNAlib-2.1.9h
H Directory Reference

Files

 2Dfold.h
 
 2Dpfold.h
 
 ali_plex.h
 
 alifold.h
 compute various properties (consensus MFE structures, partition function, Boltzmann distributed stochastic samples, ...) for RNA sequence alignments
 
 aln_util.h
 
 cofold.h
 MFE version of cofolding routines.
 
 convert_epars.h
 Functions and definitions for energy parameter file format conversion.
 
 data_structures.h
 All datastructures and typedefs shared among the Vienna RNA Package can be found here.
 
 dist_vars.h
 Global variables for Distance-Package.
 
 duplex.h
 Duplex folding function declarations...
 
 edit_cost.h
 global variables for Edit Costs included by treedist.c and stringdist.c
 
 energy_const.h
 
 energy_par.h
 
 energy_par_D.h
 
 energy_par_RD.h
 
 findpath.h
 Compute direct refolding paths between two secondary structures.
 
 fold.h
 MFE calculations and energy evaluations for single RNA sequences.
 
 fold_vars.h
 Here all all declarations of the global variables used throughout RNAlib.
 
 gquad.h
 Various functions related to G-quadruplex computations.
 
 inverse.h
 Inverse folding routines.
 
 Lfold.h
 Predicting local MFE structures of large sequences.
 
 loop_energies.h
 Energy evaluation for MFE and partition function calculations.
 
 LPfold.h
 Function declarations of partition function variants of the Lfold algorithm.
 
 MEA.h
 Computes a MEA (maximum expected accuracy) structure.
 
 mm.h
 Several Maximum Matching implementations.
 
 move_set.h
 
 naview.h
 
 pair_mat.h
 
 params.h
 
 part_func.h
 Partition function of single RNA sequences.
 
 part_func_co.h
 Partition function for two RNA sequences.
 
 part_func_up.h
 Partition Function Cofolding as stepwise process.
 
 PKplex.h
 
 plex.h
 
 plot_layouts.h
 Secondary structure plot layout algorithms.
 
 ProfileAln.h
 
 profiledist.h
 
 PS_dot.h
 Various functions for plotting RNA secondary structures, dot-plots and other visualizations.
 
 read_epars.h
 
 ribo.h
 
 RNAstruct.h
 Parsing and Coarse Graining of Structures.
 
 snofold.h
 
 snoop.h
 
 stringdist.h
 Functions for String Alignment.
 
 subopt.h
 RNAsubopt and density of states declarations.
 
 svm_utils.h
 
 treedist.h
 Functions for Tree Edit Distances.
 
 utils.h
 Various utility- and helper-functions used throughout the Vienna RNA package.