1#ifndef __VIENNA_RNA_PACKAGE_OLD_EPARS__
2#define __VIENNA_RNA_PACKAGE_OLD_EPARS__
49PRIVATE
double Tmeasure_184 = 37 +
K0;
50PRIVATE
double lxc37_184 = 107.856;
55{ { INF, INF, INF, INF, INF, INF, INF, INF},
56 { INF, -240, -330, -210, -140, -210, -210, NST},
57 { INF, -330, -340, -250, -150, -220, -240, NST},
58 { INF, -210, -250, 130, -50, -140, -130, NST},
59 { INF, -140, -150, -50, 30, -60, -100, NST},
60 { INF, -210, -220, -140, -60, -110, -90, NST},
61 { INF, -210, -240, -130, -100, -90, -130, NST},
62 { INF, NST, NST, NST, NST, NST, NST, NST}};
68{ { INF, INF, INF, INF, INF, INF, INF, INF},
69 { INF, -1060, -1340, -1210, -560, -1050, -1040, NST},
70 { INF, -1340, -1490, -1260, -830, -1140, -1240, NST},
71 { INF, -1210, -1260, -1460, -1350, -880, -1280, NST},
72 { INF, -560, -830, -1350, -930, -320, -700, NST},
73 { INF, -1050, -1140, -880, -320, -940, -680, NST},
74 { INF, -1040, -1240, -1280, -700, -680, -770, NST},
75 { INF, NST, NST, NST, NST, NST, NST, NST}};
79PRIVATE
int oldhairpin37_184[31] = {
80 INF, INF, INF, 410, 490, 440, 470, 500, 510, 520, 531,
81 542, 551, 560, 568, 575, 582, 589, 595, 601, 606,
82 611, 616, 621, 626, 630, 634, 638, 642, 646, 650};
84PRIVATE
int hairpin37_184[31] = {
85 INF, INF, INF, 570, 560, 560, 540, 590, 560, 640, 650,
86 660, 670, 678, 686, 694, 701, 707, 713, 719, 725,
87 730, 735, 740, 744, 749, 753, 757, 761, 765, 769};
89PRIVATE
int oldbulge37_184[31] = {
90 INF, 390, 310, 350, 420, 480, 500, 516, 531, 543, 555,
91 565, 574, 583, 591, 598, 605, 612, 618, 624, 630,
92 635, 640, 645, 649, 654, 658, 662, 666, 670, 673};
94PRIVATE
int bulge37_184[31] = {
95 INF, 380, 280, 320, 360, 400, 440, 459, 470, 480, 490,
96 500, 510, 519, 527, 534, 541, 548, 554, 560, 565,
97 571, 576, 580, 585, 589, 594, 598, 602, 605, 609};
99PRIVATE
int oldinternal_loop37_184[31] = {
100 INF, INF, 410, 510, 490, 530, 570, 587, 601, 614, 625,
101 635, 645, 653, 661, 669, 676, 682, 688, 694, 700,
102 705, 710, 715, 720, 724, 728, 732, 736, 740, 744};
104PRIVATE
int internal_loop37_184[31] = {
105 INF, INF, 410, 510, 170, 180, 200, 220, 230, 240, 250,
106 260, 270, 278, 286, 294, 301, 307, 313, 319, 325,
107 330, 335, 340, 345, 349, 353, 357, 361, 365, 369};
111PRIVATE
int mismatchI37_184[
NBPAIRS+1][5][5] =
113 {{0,0,0,0,0},{0,0,0,0,0},{0,0,0,0,0},{0,0,0,0,0},{0,0,0,0,0}},
128 { 0, 70, 70, -40, 70},
129 { 0, 70, 70, 70, 70},
130 { 0, -40, 70, 70, 70},
131 { 0, 70, 70, 70, 0}},
134 { 0, 70, 70, -40, 70},
135 { 0, 70, 70, 70, 70},
136 { 0, -40, 70, 70, 70},
137 { 0, 70, 70, 70, 0}},
140 { 0, 70, 70, -40, 70},
141 { 0, 70, 70, 70, 70},
142 { 0, -40, 70, 70, 70},
143 { 0, 70, 70, 70, 0}},
146 { 0, 70, 70, -40, 70},
147 { 0, 70, 70, 70, 70},
148 { 0, -40, 70, 70, 70},
149 { 0, 70, 70, 70, 0}},
151 { 90, 90, 90, 90, 90},{ 90, 90, 90, 90,-20},{ 90, 90, 90, 90, 90},
152 { 90,-20, 90, 90, 90},{ 90, 90, 90, 90, 20}}
156PRIVATE
int mismatchH37_184[
NBPAIRS+1][5][5] =
158 {{0,0,0,0,0},{0,0,0,0,0},{0,0,0,0,0},{0,0,0,0,0},{0,0,0,0,0}},
161 { -90, -150, -150, -140, -180},
162 { -90, -100, -90, -290, -80},
163 { -90, -220, -200, -160, -110},
164 { -90, -170, -140, -180, -200}},
167 { -70, -110, -150, -130, -210},
168 { -70, -110, -70, -240, -50},
169 { -70, -240, -290, -140, -120},
170 { -70, -190, -100, -220, -150}},
173 { 0, 20, -50, -30, -30},
174 { 0, -10, -20, -150, -20},
175 { 0, -90, -110, -30, 0},
176 { 0, -30, -30, -40, -110}},
179 { 0, -50, -30, -60, -50},
180 { 0, -20, -10, -170, 0},
181 { 0, -80, -120, -30, -70},
182 { 0, -60, -10, -60, -80}},
185 { 0, -30, -50, -30, -30},
186 { 0, -10, -20, -150, -20},
187 { 0, -110, -120, -20, 20},
188 { 0, -30, -30, -60, -110}},
191 { 0, -50, -30, -60, -50},
192 { 0, -20, -10, -120, -0},
193 { 0, -140, -120, -70, -20},
194 { 0, -30, -10, -50, -80}},
196 { 0, 0, 0, 0, 0},{ 0, 0, 0, 0, 0},{ 0, 0, 0, 0, 0},
197 { 0, 0, 0, 0, 0},{ 0, 0, 0, 0, 0}}
201PRIVATE
int mismatchM37_184[
NBPAIRS+1][5][5];
205PRIVATE
int mism_H_184[
NBPAIRS+1][5][5] =
207 {{0,0,0,0,0},{0,0,0,0,0},{0,0,0,0,0},{0,0,0,0,0},{0,0,0,0,0}},
210 { DEF,-1030, -950,-1030,-1030},
211 { DEF, -520, -450, -520, -670},
212 { DEF, -940, -940, -940, -940},
213 { DEF, -810, -740, -810, -860}},
216 { DEF, -520, -880, -560, -880},
217 { DEF, -720, -310, -310, -390},
218 { DEF, -710, -740, -620, -740},
219 { DEF, -500, -500, -500, -570}},
222 { DEF, -430, -600, -600, -600},
223 { DEF, -260, -240, -240, -240},
224 { DEF, -340, -690, -690, -690},
225 { DEF, -330, -330, -330, -330}},
228 { DEF, -720, -790, -960, -810},
229 { DEF, -480, -480, -360, -480},
230 { DEF, -660, -810, -920, -810},
231 { DEF, -550, -440, -550, -360}},
234 { DEF, -430, -600, -600, -600},
235 { DEF, -260, -240, -240, -240},
236 { DEF, -340, -690, -690, -690},
237 { DEF, -330, -330, -330, -330}},
240 { DEF, -400, -630, -890, -590},
241 { DEF, -430, -510, -200, -180},
242 { DEF, -380, -680, -890, -680},
243 { DEF, -280, -140, -280, -140}},
245 {DEF,DEF,DEF,DEF,DEF},{DEF,DEF,DEF,DEF,DEF},{DEF,DEF,DEF,DEF,DEF},
246 {DEF,DEF,DEF,DEF,DEF},{DEF,DEF,DEF,DEF,DEF}}
250PRIVATE
int dangle5_37_184[
NBPAIRS+1][5]=
252 { INF, INF, INF, INF, INF},
253 { INF, -50, -30, -20, -10},
254 { INF, -20, -30, -0, -0},
255 { INF, -30, -30, -40, -20},
256 { INF, -30, -10, -20, -20},
257 { INF, -30, -30, -40, -20},
258 { INF, -30, -10, -20, -20},
263PRIVATE
int dangle3_37_184[
NBPAIRS+1][5]=
265 { INF, INF, INF, INF, INF},
266 { INF, -110, -40, -130, -60},
267 { INF, -170, -80, -170, -120},
268 { INF, -70, -10, -70, -10},
269 { INF, -80, -50, -80, -60},
270 { INF, -70, -10, -70, -10},
271 { INF, -80, -50, -80, -60},
276PRIVATE
int dangle3_H_184[
NBPAIRS+1][5] =
278 { INF, INF, INF, INF, INF},
279 { 0, -740, -280, -640, -360},
280 { 0, -900, -410, -860, -750},
281 { 0, -740, -240, -720, -490},
282 { 0, -490, -90, -550, -230},
283 { 0, -570, -70, -580, -220},
284 { 0, -490, -90, -550, -230},
288PRIVATE
int dangle5_H_184[
NBPAIRS+1][5] =
290 { INF, INF, INF, INF, INF},
291 { 0, -240, 330, 80, -140},
292 { 0, -160, 70, -460, -40},
293 { 0, 160, 220, 70, 310},
294 { 0, -150, 510, 10, 100},
295 { 0, 160, 220, 70, 310},
296 { 0, -50, 690, -60, -60},
304PRIVATE
int ML_BASE37_184 = 0;
305PRIVATE
int ML_closing37_184 = 340;
306PRIVATE
int ML_intern37_184 = 40;
310PRIVATE
int MAX_NINIO_184 = 300;
311PRIVATE
int F_ninio37_184[5] = { 0, 40, 50, 20, 10 };
315PRIVATE
char Tetraloops_184[1400] =
348PRIVATE
int TETRA_ENERGY37_184[200] = {
349 -300, -300, -300, -300, -300, -300, -300, -300, -300, -250, -250, -250,
350 -250, -250, -200, -200, -200, -200, -200, -150, -150, -150, -150, -150,
351 -150, -150, -150, -150, -150, -150};
353PRIVATE
int TETRA_ENTH37_184 = -400;
355PRIVATE
char Triloops_184[241] =
"";
357PRIVATE
int Triloop_E37_184[40];
361PRIVATE
int TerminalAU_184 = 50;
364PRIVATE
int DuplexInit_184 = 410;
#define K0
Definition energy_const.h:14
#define NBPAIRS
Definition energy_const.h:24