RNAlib-2.1.9h
File List
Here is a list of all documented files with brief descriptions:
[detail level 12]
  H
 2Dfold.h
 2Dpfold.h
 ali_plex.h
 alifold.hCompute various properties (consensus MFE structures, partition function, Boltzmann distributed stochastic samples, ...) for RNA sequence alignments
 aln_util.h
 cofold.hMFE version of cofolding routines
 convert_epars.hFunctions and definitions for energy parameter file format conversion
 data_structures.hAll datastructures and typedefs shared among the Vienna RNA Package can be found here
 dist_vars.hGlobal variables for Distance-Package
 duplex.hDuplex folding function declarations..
 edit_cost.hGlobal variables for Edit Costs included by treedist.c and stringdist.c
 energy_const.h
 energy_par.h
 energy_par_D.h
 energy_par_RD.h
 findpath.hCompute direct refolding paths between two secondary structures
 fold.hMFE calculations and energy evaluations for single RNA sequences
 fold_vars.hHere all all declarations of the global variables used throughout RNAlib
 gquad.hVarious functions related to G-quadruplex computations
 inverse.hInverse folding routines
 Lfold.hPredicting local MFE structures of large sequences
 loop_energies.hEnergy evaluation for MFE and partition function calculations
 LPfold.hFunction declarations of partition function variants of the Lfold algorithm
 MEA.hComputes a MEA (maximum expected accuracy) structure
 mm.hSeveral Maximum Matching implementations
 move_set.h
 naview.h
 pair_mat.h
 params.h
 part_func.hPartition function of single RNA sequences
 part_func_co.hPartition function for two RNA sequences
 part_func_up.hPartition Function Cofolding as stepwise process
 PKplex.h
 plex.h
 plot_layouts.hSecondary structure plot layout algorithms
 ProfileAln.h
 profiledist.h
 PS_dot.hVarious functions for plotting RNA secondary structures, dot-plots and other visualizations
 read_epars.h
 ribo.h
 RNAstruct.hParsing and Coarse Graining of Structures
 snofold.h
 snoop.h
 stringdist.hFunctions for String Alignment
 subopt.hRNAsubopt and density of states declarations
 svm_utils.h
 treedist.hFunctions for Tree Edit Distances
 utils.hVarious utility- and helper-functions used throughout the Vienna RNA package
  lib
 1.8.4_epars.hFree energy parameters for parameter file conversion
 1.8.4_intloops.hFree energy parameters for interior loop contributions needed by the parameter file conversion functions
 intl11.h
 intl11_D.h
 intl11_RD.h
 intl11dH.h
 intl11dH_D.h
 intl11dH_RD.h
 intl21.h
 intl21_D.h
 intl21_RD.h
 intl21dH.h
 intl21dH_D.h
 intl21dH_RD.h
 intl22.h
 intl22_D.h
 intl22_RD.h
 intl22dH.h
 intl22dH_D.h
 intl22dH_RD.h
 list.h
 mainpage.h