1 #ifndef __VIENNA_RNA_PACKAGE_LPFOLD_H__
2 #define __VIENNA_RNA_PACKAGE_LPFOLD_H__
7 #define DEPRECATED(func) func __attribute__ ((deprecated))
9 #define DEPRECATED(func) func
37 void update_pf_paramsLP_par(
int length,
pf_paramT *parameters);
102 void putoutpU_prob_par(
double **pU,
130 void putoutpU_prob_bin_par(
double **pU,
void putoutpU_prob_bin(double **pU, int length, int ulength, FILE *fp, int energies)
Writes the unpaired probabilities (pU) or opening energies into a binary file.
The datastructure that contains temperature scaled Boltzmann weights of the energy parameters...
Definition: data_structures.h:203
All datastructures and typedefs shared among the Vienna RNA Package can be found here.
this datastructure is used as input parameter in functions of PS_dot.h and others ...
Definition: data_structures.h:48
void init_pf_foldLP(int length)
void update_pf_paramsLP(int length)
void putoutpU_prob(double **pU, int length, int ulength, FILE *fp, int energies)
Writes the unpaired probabilities (pU) or opening energies into a file.
plist * pfl_fold_par(char *sequence, int winSize, int pairSize, float cutoffb, double **pU, struct plist **dpp2, FILE *pUfp, FILE *spup, pf_paramT *parameters)
Compute partition functions for locally stable secondary structures.
plist * pfl_fold(char *sequence, int winSize, int pairSize, float cutoffb, double **pU, struct plist **dpp2, FILE *pUfp, FILE *spup)
Compute partition functions for locally stable secondary structures.