1#ifndef __VIENNA_RNA_PACKAGE_LPFOLD_H__
2#define __VIENNA_RNA_PACKAGE_LPFOLD_H__
7#define DEPRECATED(func) func __attribute__ ((deprecated))
9#define DEPRECATED(func) func
37void update_pf_paramsLP_par(
int length,
pf_paramT *parameters);
102void putoutpU_prob_par(
double **pU,
130void putoutpU_prob_bin_par(
double **pU,
void init_pf_foldLP(int length)
All datastructures and typedefs shared among the Vienna RNA Package can be found here.
void putoutpU_prob(double **pU, int length, int ulength, FILE *fp, int energies)
Writes the unpaired probabilities (pU) or opening energies into a file.
void update_pf_paramsLP(int length)
plist * pfl_fold_par(char *sequence, int winSize, int pairSize, float cutoffb, double **pU, struct plist **dpp2, FILE *pUfp, FILE *spup, pf_paramT *parameters)
Compute partition functions for locally stable secondary structures.
void putoutpU_prob_bin(double **pU, int length, int ulength, FILE *fp, int energies)
Writes the unpaired probabilities (pU) or opening energies into a binary file.
plist * pfl_fold(char *sequence, int winSize, int pairSize, float cutoffb, double **pU, struct plist **dpp2, FILE *pUfp, FILE *spup)
Compute partition functions for locally stable secondary structures.
The datastructure that contains temperature scaled Boltzmann weights of the energy parameters.
Definition data_structures.h:203
this datastructure is used as input parameter in functions of PS_dot.h and others
Definition data_structures.h:48