RNAlib-2.1.9h
subopt.h
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1/* subopt.h */
2#ifndef __VIENNA_RNA_PACKAGE_SUBOPT_H__
3#define __VIENNA_RNA_PACKAGE_SUBOPT_H__
4
5#include "data_structures.h"
6
7#define MAXDOS 1000
8
43SOLUTION *subopt (char *seq,
44 char *structure,
45 int delta,
46 FILE *fp);
47
53SOLUTION *subopt_par( char *seq,
54 char *structure,
55 paramT *parameters,
56 int delta,
57 int is_constrained,
58 int is_circular,
59 FILE *fp);
60
75SOLUTION *subopt_circ ( char *seq,
76 char *sequence,
77 int delta,
78 FILE *fp);
79
86extern int subopt_sorted;
87
88
95extern double print_energy;
96
113extern int density_of_states[MAXDOS+1];
114 /* End of group dos */
116
117#endif
All datastructures and typedefs shared among the Vienna RNA Package can be found here.
#define MAXDOS
Maximum density of states discretization for subopt.
Definition data_structures.h:28
int density_of_states[MAXDOS+1]
The Density of States.
SOLUTION * subopt_par(char *seq, char *structure, paramT *parameters, int delta, int is_constrained, int is_circular, FILE *fp)
Returns list of subopt structures or writes to fp.
double print_energy
printing threshold for use with logML
SOLUTION * subopt_circ(char *seq, char *sequence, int delta, FILE *fp)
Returns list of circular subopt structures or writes to fp.
int subopt_sorted
Sort output by energy.
SOLUTION * subopt(char *seq, char *structure, int delta, FILE *fp)
Returns list of subopt structures or writes to fp.
Solution element from subopt.c.
Definition data_structures.h:318
The datastructure that contains temperature scaled energy parameters.
Definition data_structures.h:122