struct vrna_exp_param_s

#include <ViennaRNA/params.h>

Overview

The data structure that contains temperature scaled Boltzmann weights of the energy parameters. More…

// fields

int id
double expstack[NBPAIRS+1][NBPAIRS+1]
double exphairpin[31]
double expbulge[MAXLOOP+1]
double expinternal[MAXLOOP+1]
double expmismatchExt[NBPAIRS+1][5][5]
double expmismatchI[NBPAIRS+1][5][5]
double expmismatch23I[NBPAIRS+1][5][5]
double expmismatch1nI[NBPAIRS+1][5][5]
double expmismatchH[NBPAIRS+1][5][5]
double expmismatchM[NBPAIRS+1][5][5]
double expdangle5[NBPAIRS+1][5]
double expdangle3[NBPAIRS+1][5]
double expint11[NBPAIRS+1][NBPAIRS+1][5][5]
double expint21[NBPAIRS+1][NBPAIRS+1][5][5][5]
double expint22[NBPAIRS+1][NBPAIRS+1][5][5][5][5]
double expninio[5][MAXLOOP+1]
double lxc
double expMLbase
double expMLintern[NBPAIRS+1]
double expMLclosing
double expTermAU
double expDuplexInit
double exptetra[40]
double exptri[40]
double exphex[40]
char Tetraloops[1401]
double expTriloop[40]
char Triloops[241]
char Hexaloops[1801]
double expTripleC
double expMultipleCA
double expMultipleCB
double expgquad[VRNA_GQUAD_MAX_STACK_SIZE+1][3 *VRNA_GQUAD_MAX_LINKER_LENGTH+1]
double kT
double pf_scale
double temperature
double alpha
vrna_md_t model_details
char param_file[256]

Detailed Documentation

The data structure that contains temperature scaled Boltzmann weights of the energy parameters.

Fields

int id
An identifier for the data structure.
Deprecated This attribute will be removed in version 3
double pf_scale
Scaling factor to avoid over-/underflows.
double temperature
Temperature used for loop contribution scaling.
double alpha
Scaling factor for the thermodynamic temperature.
This allows for temperature scaling in Boltzmann factors independently from the energy contributions. The resulting Boltzmann factors are then computed by :math:` e^{-E/(alpha cdot K cdot T)} `
vrna_md_t model_details
Model details to be used in the recursions.
char param_file [256]
The filename the parameters were derived from, or empty string if they represent the default.