Sunday, Feb. 10, 2013
|
| Andrea |
Tanzer |
TBI Vienna |
Welcome |
30min |
| Andrew |
Torda |
Uni Hamburg |
Phylogeny construction, toilet bowls and Newtonian dynamics |
45min |
Monday, Feb. 11, 2013
|
| 1st session |
| Philipp |
Peters |
SDU Odense |
Reconstruction of Directed Hypergraphs |
30min |
| Uffe |
Thorsen |
SDU Odense |
Restricted Atom-to-atom Mapping |
30min |
| 2nd session |
| Stefan |
Badelt |
TBI Vienna |
Design of self processing RNA |
30min |
| Sonja |
Petkovic |
Universitaet Greifswald |
Design of self processing RNA (from the wet lab perspective) |
30min |
| Dragos |
Sorescu |
Uni Freiburg |
Efficent de novo synthesis for small molecules |
30min |
| Stefan |
Hammer |
TBI Vienna |
Design of RNA sequences with given conformations. |
15min |
| Anne |
Wenzel |
RTH Copenhagen |
MetaRNAi |
15min |
Tuesday, Feb. 12, 2013
|
| 1st session |
| Lorena |
Rivarola |
UFZ Leipzig |
The first look at a new genome |
15min |
| Markus |
Fricke |
FSU Jena |
Something about assembly |
15min |
| Anne |
Nitsche |
Bioinformatik Uni Leipzig |
Splice Site Maps |
15min |
| 2nd session |
| Yu-Ting |
Hsiao |
TBI Vienna |
Inferring Gene Regulatory Networks from Prior Knowledge and Expressioin Data with S-system Model |
15min |
| Sachin |
Pundhir |
RTH Copenhagen |
Differential processing: another layer of mechanism to fine tune the regulatory networks |
15min |
| Fabian |
Amman |
TBI Vienna |
Transcription Start Site annotation with dRNA-seq |
15min |
| Florian |
Eggenhofer |
TBI Vienna |
High throughput analysis of gene-regulatory networks |
15min |
| Stefano |
Berto |
Bioinformatik Uni Leipzig |
Evolution of a co-expression network involved in primate brain function and cognitive abilities |
15min |
Wednesday, Feb. 13, 2013
|
| 1st session, chair: Daniel Merkle |
| Jakob Lykke |
Andersen |
SDU Odense |
Analysis of Graph Grammars and Chemical Reaction Networks |
30min |
| Marc |
Hellmuth |
Saarland University |
Approximative Cartesian Products |
15min |
| Lydia |
Ostermeier |
Bioinformatik Uni Leipzig |
grid property and product-like structures in hypergraphs |
15min |
| Philipp-Jens |
Ostermeier |
MPI MIS Leipzig |
Hypergraph Models of Biological Networks |
15min |
| 2nd session, chair: Kristin Reiche |
| Peter |
Kerpedjiev |
TBI Vienna |
Sequence Alignment and Position Specific Scoring Matrices |
15min |
| Christian |
Otto |
Bioinformatik Uni Leipzig |
segemehl |
30min |
| Stefanie |
Wehner |
FSU Jena |
Whole transcriptome RNA-Seq analysis of Listeria monocytogenes |
15min |
| Helene |
Kretzmer |
Bioinformatik Uni Leipzig |
Bisulfite Sequencing |
30min |
| Ruby |
Moritz |
Pacosy Uni Leipzig |
Application of Suffixtrees |
15min |
| Bob |
Zimmermann |
University of Vienna |
Algorithm for Genomic Aptamer Detection |
15min |
Thurday, Feb. 14, 2013
|
| 1st session, chair: Yann Ponty |
| Marcel |
Kucharik |
TBI Vienna |
Landscape abstraction in RNA folding kinetics |
15min |
| Jing |
Qin |
MPI MIS Leipzig |
tLandscape abstraction in RNA folding kinetics (continued) |
15min |
| Ronny |
Lorenz |
TBI Vienna |
Generalisation of Hard and Soft Constraints |
30min |
| Stefan |
Seemann |
RTH Copenhagen |
Structure enrichment |
15min |
| Corinna |
Theis |
RTH Copenhagen |
RNA 3D modules |
15min |
| 2nd session, chair: Anne Nitsche |
| Sita |
Lange |
Uni Freiburg |
Bioinformatic analyses of CRISPR RNA |
30min |
| Simranjeet |
Kaur |
RTH Copenhagen |
Interspersed repeats in human UTRs |
15min |
| Sabarinathan |
Radhakrishnan |
RTH Copenhagen |
RNAsnp |
15min |
| Aashiq Hussain |
Mirza |
RTH Copenhagen |
Non-coding RNAs in Auto-immune and Inflammatory Diseases |
15min |
| Konstantin |
Riege |
FSU Jena |
improved rna annotation pipeline |
15min |
| Hoor |
Al-Hasani |
Fraunhofer IZI Leipzig |
Single nucleotide polymorphism and lncRNAs: A question of functionality |
30min |
Friday, Feb. 15, 2013
|
| 1st session, chair: Sebastian Will |
| Rolf |
Backofen |
Uni Freiburg |
Graph-Distance within RNA Secondary Structure Ensembles |
30min |
| Patrick |
Wright |
Uni Freiburg |
Comparative genomics boosts target prediction for bacterial small RNAs |
30min |
| Joerg |
Fallmann |
TBI Vienna |
Here we ARE again |
15min |
| Xuanshi |
Liu |
Bioinformatik Uni Leipzig |
The role of POE in obesity using LRP |
15min |
| Nikolai |
Hecker |
RTH Copenhagen |
Ranking of putative miRNA-mRNA interactions based on sample distribution using coarse classification |
15min |
| 2nd session, chair: Ronny Lorenz |
| Sebastian |
Will |
Bioinformatik Uni Leipzig |
SPARSE: Quadratic Time Simultaneous Alignment and Folding of RNAs |
30min |
| Yann |
Ponty |
CNRS/Ecole Polytechnique |
Parameterized-complexity algorithms for the sequence/structure alignment problem |
30min |
| Abdullah |
Sahyoun |
Bioinformatik Uni Leipzig |
Sequence Weighting Schemes |
15min |
| Christian |
Hoener zu Siederdissen |
TBI Vienna |
Advances in Grammar Fusion |
30min |
Saturday, Feb. 16, 2013
|
| 1st session |
| Nicolas |
Wieseke |
Pacosy Uni Leipzig |
A branch and bound approach for the co-phylogeny reconciliation problem |
15min |
| Gero |
Doose |
IZBI/LIFE Leipzig |
Atypical RNAs in the Coalacanth Transcriptome |
15min |
| Matjaz |
Kovse |
Bioinformatik Uni Leipzig |
Lopsided systems |
30min |
| Hui |
Xiao |
RTH Copenhagen |
Genome wide search of structured RNAs in Hg19 |
15min |
| Matthias |
Bernt |
Uni Leipzig (Parallel Computing & Complex Systems) |
Preserving Genome Rearrangement Algorithms |
30min |
| Michael |
Wolfinger |
TBI Vienna |
RESTful RNA folding |
15min |