Program Schedule for the 29th TBI Winterseminar in Bled, Slovenia

Sunday, Feb. 16, 2014
Welcome Reception and Introduction
Monday, Feb. 17, 2014
1st session
Cheminformatics (Part 1)
Jakob Lykke Andersen SDU Odense Analysis of Generative Chemistries 15min
Grønbjerg Lützen
SDU Odense A computational approach to synthesis planning 30min
Magnus Find SDU Odense Chemistry and Computational Complexity 30min
Philipp Peters Uhuniversität
Lost in Reconstruction 15min
2nd session
Christoph Flamm TBI Wien 3D Printing and Chemistry 60min
Tuesday, Feb. 18, 2014
1st session
RNA Bioinformatics (Part 1)
Peter F. Stadler Bioinf Uni Leipzig wos so neix gibd 20min
Maria Beatriz Costa Bioinf Uni Leipzig Contribution of the long non-coding RNAs to the human cognitive abilities 15min
Markus Fricke FSU Jena Secondary structure and miRNA target prediction in HCV 15min
Pavankumar Videm Uni Freiburg BlockClust - efficient clustering and classification of non-coding RNAs from RNA-seq data 30min
Jörg Fallmann TBI Wien RNA - protein interactions in mRNA decay - A case study on TTP and HuR in AMD 20min
2nd session
Michael T.
MFPL Wien Cutting Edge Science - A Brief Introduction 10min
Cheminformatics (Part 2)
Björn Grüning Uni Freiburg Big data, little time: Moving the user to the spotlight 30min
Uffe Thorsen SDU Odense Restricted Atom-to-Atom Mapping - Redux 20min
Christian Höner zu Siederdissen TBI Wien Product Grammars for Alignment and Folding 30min
Nancy Retzlaff Bioinf Uni Leipizg Bigram Alignments and Historical Linguistics 20min
Wednesday, Feb. 19, 2014
Free Afternoon
2nd session
Graphs and Networks
Konstantin Klemm TBI Wien Effective Laplacian of temporal networks 30min
Søren Mørk RTH Copenhagen Functional Annotation of RNAs though Interaction Data 15min
Fabrizio Costa Uni Freiburg The Constructive Learning Problem: Learning to sample Graphs 30min
Nicolas Wieseke Pacosy Uni Leipzig Orthology based Phylogenetic Tree Reconstruction with ILP 25min
Ruby Moritz Pacosy Uni Leipzig Exciting Applications of Suffix Trees: The Needle & the Haystack 15min
Henrike Indrischek Bioinf Uni Leipzig Arresting the rest: Insights into the gene phylogeny of arrestins 15min
Michael Hecht Bioinf Uni Leipzig On the Greedoid structure of TDRL Problems 30min
Thurday, Feb. 20, 2014
1st session
RNA Bioinformatics
Stefanie Wehner FSU Jena TBA - Thermophilic Bacteria Analysis 15min
Corinna Theis RTH Copenhagen Enrichment of 3D modules in high-condent ncRNA predictions? 15min
Xiaoyong Pan RTH Copenhagen Genome-scale Prediction of Putative Natural microRNA Sponges from Interaction Targets 15min
Rebecca Kirsch Bioinf Uni Leipzig High-Throughput Identification of RNA-RNA Interactions 15min
RTH Copenhagen Expression analysis of structured-RNA candidates in Autoimmune and Inflammatory Diseases 15min
Xuanshi Liu Bioinf Uni Leipzig The Role of Parent-of-Origin in Obesity using Genomewide Long Range Phasing 15min
Martin Hölzer FSU Jena Assembly and Annotation of Mycobacterium avium ssp. paratuberculosis Typ-III 15min
2nd session
RNA Folding Kinetics
Ronny Lorenz Bioinf Uni Leipzig Predicting Transcription Terminator Efficiency 15min
Marzel Kucharik TBI Wien RNA folding kinetics 15min
Dominik Luntzer TBI Wien SHAPE directed RNA folding 15min
Stefan Hammer TBI Wien RNAdesign: Des Problem mit de Ohrwaschln 15min
Stefan Badelt TBI Wien Folding kinetics of self-polymerizing RNA 15min
Friday, Feb. 21, 2014
1st session
RNA 3D Structures and Motifs
Craig Zirbel TBI Wien Inferring RNA 3D motifs from sequence 30min
Peter Kerpedjiev TBI Wien Probabilistic RNA 3D Structure Modelling 15min
Florian Eggenhofer TBI Wien RNAlien - unsupervised RNA family model construction 15min
Genomics (Part 1)
Marcus Lechner Uni Marburg Orthology detection combining clustering and synteny 30min
2nd session
Genomics (Part 2)
Pedro Feijao Bielefeld University The Potential of Family-Free Genome Comparison 30min
Lorena Duarte Bioinf Uni Leipzig A First Glimpse at the Genome of the Baikalian Amphipod Eulimnogammarus verrucosus 15min
Irene Fernández Casas Universidad Pablo de Olavide (Sevilla) Population genetics of Baikalian amphipods 15min
Abdullah Sahyoun Bioinf Uni Leipzig Taxon specic models for mitochondrial genes - Detection of tRNA Remolding and Genetic code changes 15min
Saturday, Feb. 22, 2014
1st session
TX-Omics Application
Nikolai Hecker RTH Copenhagen Brain structure specific gene expression and potential regulatory elements 15min
Witold Januszewski ALU Freiburg Designing an innovative metatranscriptomic pipeline 15min
Daniel Gerighausen Bioinf Uni Leipzig Clustering to the power of 2 30min
Lydia Steiner Bioinf Uni Leipzig Modeling Epigenetic Memory 30min
Sarah Berkemer Bioinf Uni Leipzig Comparative Detection of Processed Small RNAs in Archaea 20min