Sequence data and alignments


RNAtype alignment eta Reference organism len RP PK structure
Coronavirus corona.aln 0.94 Z24675 63 18 1 Z24675.db Z24675.list Z24675.ps
HDV hdv.aln 0.91 AJ309880 88 27 1 AJ309880.db AJ309880.list AJ309880.ps
Tombusvirus tombus.aln 0.92 U80935 91 24 1 U80935.db U80935.list U80935.ps
Enterovirus entero.aln 0.87 M88483 103 38 1 M88483.db M88483.list M88483.ps
alpha-operon mRNA alpha.aln 0.79 M21432 112 22 1 ecoli.db ecoli.list ecoli.ps
SRP RNA srp.aln 0.59 Halobacterium halobium 305 86 1 halhal.db halhal.list halhal.ps
tmRNA tm.aln 0.60 Escherichia coli 362 106 4 ecoli.db ecoli.list ecoli.ps
RNase P RNA RNaseP.aln 0.58 Agrobacterium tumefaciens 404 124 2 atum.db atum.list atum.ps
Telomerase RNA Telomerase.aln 0.64 Homo sapiens 452 102 1 human.db human.list human.ps
16S rRNA 16S.aln 0.63 Escherichia coli 1542 478 2 ecoli.db ecoli.list ecoli.ps

We list the mean pairwise sequence identity eta of the alignment, the name of the reference organism, its sequence length len, the number of base pairs RP of the reference structure and the number of pseudoknots PK of the reference structure.

Sequences contained in the alignments.

The sequences and the reference structure of Coronavirus, HDV and Tombusvirus were taken from Rfam.
The sequences of Enterovirus were taken from GenBank, and the reference structure from Rfam.

The alignments and the reference structure were taken from the following sources:
alpha-operon mRNA: Rfam
SRP RNA: SRPDB
tmRNA: tmRNA Database
RNase P RNA: RNase P Database
Telomerase RNA: Rfam
16S rRNA: The Comparative RNA Web Site
Last modified: 2004-09-02 16:32:11 xtina