Index >

Results for CNB 167677

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment

167677_ENSG00000148082_HUMAN_7808_7994/1-199    T-----------CCCGCCTTTGATTGAAATGGAATCTTCCACTATTGAGCAAGCCTTTGT
167677_ENSMUSG00000021448_MOUSE_7437_7623/1-199 T-----------CCCGCCCTTGATTGAAATGGAATCTTCCACTATTGAGCGAGCCTTTGT
167677_SINFRUG00000145101_FUGU_5665_5860/1-199  -AAACGGGGACGCACACCTGCGTCTGGAATGGTCTCTTCCACTATTCTGCAAGCCTCCCT
167677_ENSRNOG00000014366_RAT_7577_7762/1-199   T-----------CCCGCCCTTGATTGAAATGGAATCTTCCACTATTGAGCGAGCCTTTGT
                                                            * * **   *  ** *****  ************  ** *****   *


167677_ENSG00000148082_HUMAN_7808_7994/1-199    TGAATGAGTCATCGGGGCGGCCGCTCATTGGCTGAGGCCGCTGGAGCCCAGGGGATTGCC
167677_ENSMUSG00000021448_MOUSE_7437_7623/1-199 TGAATGAGTCATCGGCTCAGCCTCTCATTGGCTGAAGCCGCCTGAGCCCAGGGGATTGCC
167677_SINFRUG00000145101_FUGU_5665_5860/1-199  -GAATGAGTCATCCCGCCGGCTCCTCATTGGATGAGACCATGCCATCCCAAGGGATTGCC
167677_ENSRNOG00000014366_RAT_7577_7762/1-199   TGAATGAGTCATCGGCGCAGCCTCTCATTGGTTGAGGCCGCCTGAGCCCAGGGGATTGCC
                                                 ************    * **  ******** ***  **     * **** *********


167677_ENSG00000148082_HUMAN_7808_7994/1-199    TGGCACCGGCTGCAAGGCCCTGC-TTCATTCACAGAAACGCTGGCTCGCTCGCTAGCCTT
167677_ENSMUSG00000021448_MOUSE_7437_7623/1-199 TGGCACCGGCTGCAAGGACCCGC-TCCATTCACAGAAACGCTGGCTCGCTCGCCGGCCCT
167677_SINFRUG00000145101_FUGU_5665_5860/1-199  TTGCAGAGACAGAAAGGCCTTGCATCCATTCACAGAAACATTGGTATGCCATCCTGCTAT
167677_ENSRNOG00000014366_RAT_7577_7762/1-199   TGGCACCGGCTGCAAGGACCCGC-TCCATTCACAGAAACGCTGGCTCGCTCGCCGGCCCT
                                                * ***  * * * **** *  ** * *************  ***   **   *  **  *


167677_ENSG00000148082_HUMAN_7808_7994/1-199    TTCATTCACACAAACAGCA
167677_ENSMUSG00000021448_MOUSE_7437_7623/1-199 TTCATTCACACAAACAGCA
167677_SINFRUG00000145101_FUGU_5665_5860/1-199  TTCATTCACATAAAAGGC-
167677_ENSRNOG00000014366_RAT_7577_7762/1-199   TTCATTCACACAAACAGC-
                                                ********** ***  ** 


//

167677.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 199
 Mean pairwise identity:  79.26
 Mean single sequence MFE: -65.12
 Consensus MFE: -41.10
 Energy contribution: -42.98
 Covariance contribution:   1.88
 Mean z-score:  -1.73
 Structure conservation index:   0.63
 SVM decision value:   0.12
 SVM RNA-class probability: 0.594393
 Prediction: RNA

######################################################################

>167677_ENSG00000148082_HUMAN_7808_7994/1-199
UCCCGCCUUUGAUUGAAAUGGAAUCUUCCACUAUUGAGCAAGCCUUUGUUGAAUGAGUCAUCGGGGCGGCCGCUCAUUGGCUGAGGCCGCUGGAGCCCAGGGGAUUGCCUGGCACCGGCUGCAAGGCCCUGCUUCAUUCACAGAAACGCUGGCUCGCUCGCUAGCCUUUUCAUUCACACAAACAGCA
.........(((.(((((((((....))))(((.(((((.((((..(((((((((((....(((((((((((((....)))...))))(((((.(((.(((......)))))).)))))......)))))).)))))))).....)))..)))).))))).)))...))))).)))........... ( -70.20)
>167677_ENSMUSG00000021448_MOUSE_7437_7623/1-199
UCCCGCCCUUGAUUGAAAUGGAAUCUUCCACUAUUGAGCGAGCCUUUGUUGAAUGAGUCAUCGGCUCAGCCUCUCAUUGGCUGAAGCCGCCUGAGCCCAGGGGAUUGCCUGGCACCGGCUGCAAGGACCCGCUCCAUUCACAGAAACGCUGGCUCGCUCGCCGGCCCUUUCAUUCACACAAACAGCA
.........(((.(((((((((....))))((..((((((((((..(((((((((......((((((((((.......))))).)))))...((((...(((..(((((((....)))..))))...))))))))))))).....)))..))))))))))..))...))))).)))........... ( -67.70)
>167677_SINFRUG00000145101_FUGU_5665_5860/1-199
AAACGGGGACGCACACCUGCGUCUGGAAUGGUCUCUUCCACUAUUCUGCAAGCCUCCCUGAAUGAGUCAUCCCGCCGGCUCCUCAUUGGAUGAGACCAUGCCAUCCCAAGGGAUUGCCUUGCAGAGACAGAAAGGCCUUGCAUCCAUUCACAGAAACAUUGGUAUGCCAUCCUGCUAUUUCAUUCACAUAAAAGGC
...(((((..(((.(((((..((((((((((...............(((((((((..(((...(((((........)))))(((...(((((.(......))))))(((((.....)))))..))).)))..))).)))))).)))))).))))..))..))).)))..)))))...................... ( -57.59)
>167677_ENSRNOG00000014366_RAT_7577_7762/1-199
UCCCGCCCUUGAUUGAAAUGGAAUCUUCCACUAUUGAGCGAGCCUUUGUUGAAUGAGUCAUCGGCGCAGCCUCUCAUUGGUUGAGGCCGCCUGAGCCCAGGGGAUUGCCUGGCACCGGCUGCAAGGACCCGCUCCAUUCACAGAAACGCUGGCUCGCUCGCCGGCCCUUUCAUUCACACAAACAGC
.........(((.(((((((((....))))((..((((((((((..(((((((((.......((((..(((((.........))))))))).((((...(((..(((((((....)))..))))...))))))))))))).....)))..))))))))))..))...))))).))).......... ( -65.00)
>consensus
U___________CCCGCCCUUGAUUGAAAUGGAAUCUUCCACUAUUGAGCAAGCCUUUGUUGAAUGAGUCAUCGGCGCAGCCUCUCAUUGGCUGAGGCCGCCUGAGCCCAGGGGAUUGCCUGGCACCGGCUGCAAGGACCCGC_UCCAUUCACAGAAACGCUGGCUCGCUCGCCGGCCCUUUCAUUCACACAAACAGC_
.....................((.((((((((......))).....((((((((((((((.(((((.(....((((((((((.......))))...((.(((.(.(((..(((.....)))))).).))).))...))))))...)))))))))))......)))))))))........))))).))............ (-41.10 = -42.98 +   1.88) 

167677.rnaz

RNAalifold consensus structure

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