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Results for CNB 238772-rev

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment


238772_ENSG00000162779_HUMAN_9247_9320/1-75        TACTTACATGGATGGGAAGAGCAATAGCCTGTTTTCACTATCTGTGAGGAGAGTAGTGTA
238772_ENSMUSG00000026601_MOUSE_6994_7068/1-75     TACTTACATGGATGGGAAGAGCAACAACCTGTTCTCACTGTCTGTGAGGAGGGTGGTGTA
238772_ENSDARG00000006042_ZEBRAFISH_3932_4004/1-75 -ACTCACATGGATGGAAAGACTCTTAGCTTGTTTTTCTCATCTTCTAGAAGAACTGTGAA
238772_ENSRNOG00000024694_RAT_6757_6830/1-75       TACTTACATGGATGGGAAGAGCAGCAGCCTATTCTCGCTGTCTGTGAGGAGGGTGGTGTA
                                                    *** ********** ****     * * * ** *     ***   ** **    *** *


238772_ENSG00000162779_HUMAN_9247_9320/1-75        TTTGCTACAATAAA-
238772_ENSMUSG00000026601_MOUSE_6994_7068/1-75     TTTGCTGCAACAAAT
238772_ENSDARG00000006042_ZEBRAFISH_3932_4004/1-75 TTTGCTATAAAAAA-
238772_ENSRNOG00000024694_RAT_6757_6830/1-75       TTTGCTGCAACAAA-
                                                   ******  ** *** 

238772-rev.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 75
 Mean pairwise identity:  76.96
 Mean single sequence MFE: -20.47
 Consensus MFE: -14.98
 Energy contribution: -15.35
 Covariance contribution:   0.38
 Mean z-score:  -2.11
 Structure conservation index:   0.73
 SVM decision value:   1.85
 SVM RNA-class probability: 0.979763
 Prediction: RNA

######################################################################

>238772_ENSG00000162779_HUMAN_9247_9320/1-75
UACUUACAUGGAUGGGAAGAGCAAUAGCCUGUUUUCACUAUCUGUGAGGAGAGUAGUGUAUUUGCUACAAUAAA
..(((.(((((((((..((((((......))))))..))))))))))))...(((((......)))))...... ( -22.60)
>238772_ENSMUSG00000026601_MOUSE_6994_7068/1-75
UACUUACAUGGAUGGGAAGAGCAACAACCUGUUCUCACUGUCUGUGAGGAGGGUGGUGUAUUUGCUGCAACAAAU
..(((.(((((((((..((((((......))))))..))))))))))))...(..((......))..)....... ( -22.80)
>238772_ENSDARG00000006042_ZEBRAFISH_3932_4004/1-75
ACUCACAUGGAUGGAAAGACUCUUAGCUUGUUUUUCUCAUCUUCUAGAAGAACUGUGAAUUUGCUAUAAAAAA
..(((((.((((((((((((.........))))))).)))))((.....))..)))))............... ( -14.70)
>238772_ENSRNOG00000024694_RAT_6757_6830/1-75
UACUUACAUGGAUGGGAAGAGCAGCAGCCUAUUCUCGCUGUCUGUGAGGAGGGUGGUGUAUUUGCUGCAACAAA
..(((.((....))..))).((((((((((.(((((((.....)))))))))))........))))))...... ( -21.80)
>consensus
UACUUACAUGGAUGGGAAGAGCAACAGCCUGUUCUCACUAUCUGUGAGGAGAGUGGUGUAUUUGCUACAACAAA_
..(((((..((((((..((((((......))))))..)))))))))))....(((((......)))))....... (-14.98 = -15.35 +   0.38) 

238772-rev.rnaz

RNAalifold consensus structure

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