Index >

Results for CNB 363131-rev

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment


363131_ENSG00000104313_HUMAN_8174_8295/1-126        TTTTAACCAAAAGAGAAAAAGGAGGATACTGCAGCAGTGAAAGGCATATTGTCTTTAAGT
363131_ENSRNOG00000007590_RAT_8237_8360/1-126       TTTTAACCAAAAGAGAAAAGGGAGGATACTGCGGCCAGGAAAGGCATAGTATCTTTAAGT
363131_ENSDARG00000014259_ZEBRAFISH_7954_8061/1-126 -----------------AAGAGAGGAGTCGGTGGAACAGAGAGGCACATTGTCTGTAGGT
363131_ENSMUSG00000025932_MOUSE_8197_8319/1-126     -TTTAACCAAACGAGAAAAGGGAGGATACTGCAGCCAGGAAAGGCATAGTGTCTTTAAGT
                                                                     **  *****  * *  *    ** ***** * * *** ** **


363131_ENSG00000104313_HUMAN_8174_8295/1-126        T-GAGGTCTCAACTGTTGTTTCCTCC-TGCAGGTCTATCCTCCT--CCTCCCCTTGTCAG
363131_ENSRNOG00000007590_RAT_8237_8360/1-126       G-GAGGGCTCAACTGCTGTTTCTTCC-TGCAGGTCTCTCCTCCTCCCCTCCCCTTGTCAA
363131_ENSDARG00000014259_ZEBRAFISH_7954_8061/1-126 TCAACCCCTCCACCGTTGTTTCCTCCTTCCAGGTCTTCCCTCCTCCCGGCCCAATGACGG
363131_ENSMUSG00000025932_MOUSE_8197_8319/1-126     G-GAGGGCTCAACTGTTGTTTCTTCC-TGCAGGTCTATCCTCCTCCCCTCCCCTTGTCAG
                                                       *   *** ** * ****** *** * *******  ******  *  ***  ** *  


363131_ENSG00000104313_HUMAN_8174_8295/1-126        GGGGGG
363131_ENSRNOG00000007590_RAT_8237_8360/1-126       GAGGAG
363131_ENSDARG00000014259_ZEBRAFISH_7954_8061/1-126 AAAGG-
363131_ENSMUSG00000025932_MOUSE_8197_8319/1-126     GAGGGG
                                                       *  

363131-rev.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 126
 Mean pairwise identity:  73.03
 Mean single sequence MFE: -41.62
 Consensus MFE: -20.62
 Energy contribution: -24.25
 Covariance contribution:   3.62
 Mean z-score:  -2.16
 Structure conservation index:   0.50
 SVM decision value:   0.81
 SVM RNA-class probability: 0.857069
 Prediction: RNA

######################################################################

>363131_ENSG00000104313_HUMAN_8174_8295/1-126
UUUUAACCAAAAGAGAAAAAGGAGGAUACUGCAGCAGUGAAAGGCAUAUUGUCUUUAAGUUGAGGUCUCAACUGUUGUUUCCUCCUGCAGGUCUAUCCUCCUCCUCCCCUUGUCAGGGGGGG
...................(((((((((((((((.((.(((((((.....)))....((((((....))))))....)))))).))))))...)))))))))((((((((....)))))))) ( -47.50)
>363131_ENSRNOG00000007590_RAT_8237_8360/1-126
UUUUAACCAAAAGAGAAAAGGGAGGAUACUGCGGCCAGGAAAGGCAUAGUAUCUUUAAGUGGAGGGCUCAACUGCUGUUUCUUCCUGCAGGUCUCUCCUCCUCCCCUCCCCUUGUCAAGAGGAG
...................((((((((((((..(((......))).))))))).....(.((((((.....((((...........))))..)))))).))))))((((.((.....)).)))) ( -38.50)
>363131_ENSDARG00000014259_ZEBRAFISH_7954_8061/1-126
AAGAGAGGAGUCGGUGGAACAGAGAGGCACAUUGUCUGUAGGUUCAACCCCUCCACCGUUGUUUCCUCCUUCCAGGUCUUCCCUCCUCCCGGCCCAAUGACGGAAAGG
(((.((((((.((((((((((((.((.....)).))))).((.....))..)))))))....)))))))))(((((........))).(((.........)))...)) ( -33.00)
>363131_ENSMUSG00000025932_MOUSE_8197_8319/1-126
UUUAACCAAACGAGAAAAGGGAGGAUACUGCAGCCAGGAAAGGCAUAGUGUCUUUAAGUGGAGGGCUCAACUGUUGUUUCUUCCUGCAGGUCUAUCCUCCUCCCCUCCCCUUGUCAGGAGGGG
..................(((((((((((((((..(((((..(((..(.((((((.....)))))).)...)))..)))))..))))))...)))))))))(((((((........))))))) ( -47.50)
>consensus
_UUUAACCAAAAGAGAAAAGGGAGGAUACUGCAGCAAGGAAAGGCAUAGUGUCUUUAAGUG_GAGGGCUCAACUGUUGUUUCCUCC_UGCAGGUCUAUCCUCCUCCCCUCCCCUUGUCAGGAGGGG
...................((((((((.((((((.((((((..(((....((((((......)))))).....)))..)))))).).)))))....))))))))..(((((........))))).. (-20.62 = -24.25 +   3.62) 

363131-rev.rnaz

RNAalifold consensus structure

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