Index >

Results for CNB 363138

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment

363138_ENSG00000104313_HUMAN_8178_8286/1-114        -CCCTGACAAGGGGAGG--AGGAGGATAGACCTGCA-GGAGGAAACAACAGTTGAGACCT
363138_ENSDARG00000014259_ZEBRAFISH_7958_8067/1-114 TCCGTCATTGGGCCGGG--AGGAGGGAAGACCTGGAAGGAGGAAACAACGGTGGAGGGGT
363138_ENSMUSG00000025932_MOUSE_8201_8311/1-114     -TCCTGACAAGGGGAGGGGAGGAGGATAGACCTGCA-GGAAGAAACAACAGTTGAGCCCT
363138_ENSRNOG00000007590_RAT_8241_8351/1-114       -TCTTGACAAGGGGAGGGGAGGAGGAGAGACCTGCA-GGAAGAAACAGCAGTTGAGCCCT
                                                      * * *   **   **  ******  ******* * *** ****** * ** ***   *


363138_ENSG00000104313_HUMAN_8178_8286/1-114        C-AACTTAAAGACAATATGCCTTTCACTGCTGCAGTATCCTCCTTTTTCTCTTT
363138_ENSDARG00000014259_ZEBRAFISH_7958_8067/1-114 TGAACCTACAGACAATGTGCCTCTCTGTTCCACCGACTCCTC-TCTTCCCCTT-
363138_ENSMUSG00000025932_MOUSE_8201_8311/1-114     C-CACTTAAAGACACTATGCCTTTCCTGGCTGCAGTATCCTCCCTTTTCTCGTT
363138_ENSRNOG00000007590_RAT_8241_8351/1-114       C-CACTTAAAGATACTATGCCTTTCCTGGCCGCAGTATCCTCCCTTTTCTCTTT
                                                       ** ** *** * * ***** **    *  * *  *****   ** * * * 


//

363138.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 114
 Mean pairwise identity:  75.78
 Mean single sequence MFE: -39.90
 Consensus MFE: -19.66
 Energy contribution: -20.23
 Covariance contribution:   0.56
 Mean z-score:  -2.48
 Structure conservation index:   0.49
 SVM decision value:   1.08
 SVM RNA-class probability: 0.912551
 Prediction: RNA

######################################################################

>363138_ENSG00000104313_HUMAN_8178_8286/1-114
CCCUGACAAGGGGAGGAGGAGGAUAGACCUGCAGGAGGAAACAACAGUUGAGACCUCAACUUAAAGACAAUAUGCCUUUCACUGCUGCAGUAUCCUCCUUUUUCUCUUU
.......((((((((((((((((((...((((((.((........((((((....)))))).((((.(.....).))))..)).)))))))))))))))))))))))). ( -42.80)
>363138_ENSDARG00000014259_ZEBRAFISH_7958_8067/1-114
UCCGUCAUUGGGCCGGGAGGAGGGAAGACCUGGAAGGAGGAAACAACGGUGGAGGGGUUGAACCUACAGACAAUGUGCCUCUCUGUUCCACCGACUCCUCUCUUCCCCUU
((((....))))..((((((((((.((.((.....)).(....)..((((((((.((..((...((((.....))))..)).)).)))))))).)).))))))))))... ( -41.60)
>363138_ENSMUSG00000025932_MOUSE_8201_8311/1-114
UCCUGACAAGGGGAGGGGAGGAGGAUAGACCUGCAGGAAGAAACAACAGUUGAGCCCUCCACUUAAAGACACUAUGCCUUUCCUGGCUGCAGUAUCCUCCCUUUUCUCGUU
((((....))))(((..((((((((((...((((((((.(.(((....)))...)..)))...............(((......)))))))))))))).))))..)))... ( -37.40)
>363138_ENSRNOG00000007590_RAT_8241_8351/1-114
UCUUGACAAGGGGAGGGGAGGAGGAGAGACCUGCAGGAAGAAACAGCAGUUGAGCCCUCCACUUAAAGAUACUAUGCCUUUCCUGGCCGCAGUAUCCUCCCUUUUCUCUUU
.......((((..(((((((((((.(.(((.(((.(.......).))))))...)))))).......((((((..(((......)))...)))))).))))))..).))). ( -37.80)
>consensus
_CCCUGACAAGGGGAGG__AGGAGGAUAGACCUGCA_GGAAGAAACAACAGUUGAGCCCUC_AACUUAAAGACAAUAUGCCUUUCCUGGCCGCAGUAUCCUCCCUUUUCUCUUU
..........((..(((((((((((.....)).(((.(((((.........(((((........)))))............))))).))).......)))))))))..)).... (-19.66 = -20.23 +   0.56) 

363138.rnaz

RNAalifold consensus structure

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