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Results for CNB 386451

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment

386451_ENSG00000146067_HUMAN_5472_5540/1-71    -CCCCGGCAGCACCTTTCCCTGCCCAGGCTTCAGAGTGCCCTGTTGCTGCTGCCACTGCC
386451_ENSMUSG00000021495_MOUSE_6074_6142/1-71 -CCCCAGTGGCACCTTTCCCCGCTCAGGCTTCAGAGTGCCCTATGGCTGCTGCCACTGCC
386451_SINFRUG00000121443_FUGU_419_489/1-71    TCTCCGCTGGTACCAAACCTCCACAACCCTTCATCCAAACTAGGTTCTCCCGGTCCGGAT
386451_ENSRNOG00000012771_RAT_5781_5848/1-71   -CCCCAGCAGCACCCTTCCCTGCCCAGGCTTCAGAGTGCCCTATGGCTGCTGCCACTGCC
                                                * **    * ***   **      *  *****      *      ** * *   * *  


386451_ENSG00000146067_HUMAN_5472_5540/1-71    C-CCCACACTC
386451_ENSMUSG00000021495_MOUSE_6074_6142/1-71 A-CCCACCCCT
386451_SINFRUG00000121443_FUGU_419_489/1-71    AGCCCAACGTC
386451_ENSRNOG00000012771_RAT_5781_5848/1-71   A-CCCACCCC-
                                                 ****     


//

386451.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 71
 Mean pairwise identity:  65.24
 Mean single sequence MFE: -16.47
 Consensus MFE:  -7.24
 Energy contribution:  -7.92
 Covariance contribution:   0.69
 Mean z-score:  -1.86
 Structure conservation index:   0.44
 SVM decision value:   0.32
 SVM RNA-class probability: 0.686170
 Prediction: RNA

######################################################################

>386451_ENSG00000146067_HUMAN_5472_5540/1-71
CCCCGGCAGCACCUUUCCCUGCCCAGGCUUCAGAGUGCCCUGUUGCUGCUGCCACUGCCCCCCACACUC
....(((((((.........((.(((((........).))))..)))))))))................ ( -17.80)
>386451_ENSMUSG00000021495_MOUSE_6074_6142/1-71
CCCCAGUGGCACCUUUCCCCGCUCAGGCUUCAGAGUGCCCUAUGGCUGCUGCCACUGCCACCCACCCCU
.....((((((........(((((........))))).....((((....)))).))))))........ ( -20.10)
>386451_SINFRUG00000121443_FUGU_419_489/1-71
UCUCCGCUGGUACCAAACCUCCACAACCCUUCAUCCAAACUAGGUUCUCCCGGUCCGGAUAGCCCAACGUC
.....((((((.....))).............((((..((..((....))..))..)))))))........ ( -12.30)
>386451_ENSRNOG00000012771_RAT_5781_5848/1-71
CCCCAGCAGCACCCUUCCCUGCCCAGGCUUCAGAGUGCCCUAUGGCUGCUGCCACUGCCACCCACCCC
.....(((((((.((.....((....))...)).))))....((((....)))).))).......... ( -15.70)
>consensus
_CCCCAGCAGCACCUUUCCCCGCCCAGGCUUCAGAGUGCCCUAUGGCUGCUGCCACUGCCA_CCCACCCCC
.....(((((((.........(((..(((........)))....))))))))))................. ( -7.24 =  -7.92 +   0.69) 

386451.rnaz

RNAalifold consensus structure

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