Index >

Results for CNB 414303

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment

414303_ENSG00000143549_HUMAN_1805_1947/1-143    TAGCTGGAGGATGAGCTGGCAGCCATGCAGAAGAAGCTGAAAGGGACAGAGGATGAGCTG
414303_SINFRUG00000130484_FUGU_7340_7481/1-143  -AGCTTGAGGACGATTTGGTAGCCCTGCAGAAGAAATTAAAGGGGACAGAAGATGAGTTG
414303_ENSMUSG00000027940_MOUSE_3986_4126/1-143 -AGCTAGAGGATGAACTAGCAACCATGCAGAAGAAGCTGAAAGGGACAGAGGATGAGCTG
414303_ENSRNOG00000017441_RAT_4521_4661/1-143   -AGCTAGAGGATGAACTAGCAACCATGCAGAAGAAGCTGAAAGGGACAGAGGATGAGCTG
                                                 **** ***** **  * * * ** **********  * ** ******** ****** **


414303_ENSG00000143549_HUMAN_1805_1947/1-143    GACAAGTATTCTGAAGCTTTGAAGGATGCCCAGGAGAAGCTGGAACTGGCAGAGAAGAAG
414303_SINFRUG00000130484_FUGU_7340_7481/1-143  GACAAGTTCTCCGAGGCTCTTAAAGATGCTCAGGAGAAGCTTGAACTGGCAGAAAAGAAA
414303_ENSMUSG00000027940_MOUSE_3986_4126/1-143 GACAAGTATTCGGAAGCTTTAAAGGATGCTCAGGAGAAGCTGGAGCTAGCAGAGAAGAAG
414303_ENSRNOG00000017441_RAT_4521_4661/1-143   GACAAGTATTCTGAGGCTTTAAAGGATGCCCAGGAGAAGCTGGAGCTAGCAGAGAAGAAG
                                                *******  ** ** *** * ** ***** *********** ** ** ***** ***** 


414303_ENSG00000143549_HUMAN_1805_1947/1-143    GCTGCTGATGTGAGTATTAGAGA
414303_SINFRUG00000130484_FUGU_7340_7481/1-143  GCCACAGACGTAAGTATGGGGGA
414303_ENSMUSG00000027940_MOUSE_3986_4126/1-143 GCAGCCGACGTGAGTATTGGGG-
414303_ENSRNOG00000017441_RAT_4521_4661/1-143   GCAGCGGATGTGAGTATTGGGA-
                                                **  * ** ** *****  *   


//

414303.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 143
 Mean pairwise identity:  84.19
 Mean single sequence MFE: -35.94
 Consensus MFE: -24.88
 Energy contribution: -24.50
 Covariance contribution:  -0.37
 Mean z-score:  -1.66
 Structure conservation index:   0.69
 SVM decision value:   0.21
 SVM RNA-class probability: 0.638540
 Prediction: RNA

######################################################################

>414303_ENSG00000143549_HUMAN_1805_1947/1-143
UAGCUGGAGGAUGAGCUGGCAGCCAUGCAGAAGAAGCUGAAAGGGACAGAGGAUGAGCUGGACAAGUAUUCUGAAGCUUUGAAGGAUGCCCAGGAGAAGCUGGAACUGGCAGAGAAGAAGGCUGCUGAUGUGAGUAUUAGAGA
.((((........))))(((((((...(((((...(((.....(..(((........)))..).))).)))))...(((((..((.(..((((......)))).)))..))))).....)))))))................. ( -37.90)
>414303_SINFRUG00000130484_FUGU_7340_7481/1-143
AGCUUGAGGACGAUUUGGUAGCCCUGCAGAAGAAAUUAAAGGGGACAGAAGAUGAGUUGGACAAGUUCUCCGAGGCUCUUAAAGAUGCUCAGGAGAAGCUUGAACUGGCAGAAAAGAAAGCCACAGACGUAAGUAUGGGGGA
.((((........((((....((((....((....))...)))).))))......((..(.((((((((((..(((((.....)).)))..)))).))))))..)..))........))))..((.((....)).))..... ( -36.80)
>414303_ENSMUSG00000027940_MOUSE_3986_4126/1-143
AGCUAGAGGAUGAACUAGCAACCAUGCAGAAGAAGCUGAAAGGGACAGAGGAUGAGCUGGACAAGUAUUCGGAAGCUUUAAAGGAUGCUCAGGAGAAGCUGGAGCUAGCAGAGAAGAAGGCAGCCGACGUGAGUAUUGGGG
.(((((........)))))..((.....((((...(((((..(..(((........)))..).....)))))...))))....((((((((.(....((((....)))).........((...))..).)))))))))).. ( -34.00)
>414303_ENSRNOG00000017441_RAT_4521_4661/1-143
AGCUAGAGGAUGAACUAGCAACCAUGCAGAAGAAGCUGAAAGGGACAGAGGAUGAGCUGGACAAGUAUUCUGAGGCUUUAAAGGAUGCCCAGGAGAAGCUGGAGCUAGCAGAGAAGAAGGCAGCGGAUGUGAGUAUUGGGA
.(((((........)))))..((((((.......((((.......((.....)).(((((...(((.(((((.(((..........))))))))...)))....)))))...........))))........))).))).. ( -35.06)
>consensus
_AGCUAGAGGAUGAACUAGCAACCAUGCAGAAGAAGCUGAAAGGGACAGAGGAUGAGCUGGACAAGUAUUCUGAAGCUUUAAAGGAUGCCCAGGAGAAGCUGGAACUAGCAGAGAAGAAGGCAGCAGACGUGAGUAUUGGGG_
..(((((........)))))..((((((.......(((.....(..(((........)))..).)))..((((.((((((......(((((((......)))).....)))......)))))).)))).....))).)))... (-24.88 = -24.50 +  -0.37) 

414303.rnaz

RNAalifold consensus structure

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