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Results for CNB 461722-rev

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment


461722_ENSMUSG00000034255_MOUSE_6286_6370/1-86     CACCTCTAACACATTCTTCTTGCTGGATTTGTCTTTGGGGGCCCAAGAGAGAGAGGCCCC
461722_ENSDARG00000006344_ZEBRAFISH_5690_5774/1-86 -ACCTCCAGAACGTTTTTCTTGCTTGATTTGTCCTTGGGCGCCCGGTTAATTGTGGCGCC
461722_SINFRUG00000131017_FUGU_9289_9374/1-86      AACCTCCAAAACATTCTTTTTGCTGGATTTGTCTTTTGTGGCCCAGCAAATAGTCGCTCC
461722_ENSRNOG00000028569_RAT_5899_5983/1-86       CACCTCTAGCACATTCTTCTTGCTGGATTTGTCTTTGGGGGCCCACGAGAGCGAGGCCCC
                                                    ***** *  ** ** ** ***** ******** ** *  ****     *  *  ** **


461722_ENSMUSG00000034255_MOUSE_6286_6370/1-86     CTTCAGTTCGACTGTGTATTCAGGG-
461722_ENSDARG00000006344_ZEBRAFISH_5690_5774/1-86 TTTCAGATCCACTGTGAATTCTGGGA
461722_SINFRUG00000131017_FUGU_9289_9374/1-86      TTTCAGGTCCACTGTGACCTCTGGGA
461722_ENSRNOG00000028569_RAT_5899_5983/1-86       CCTCAGTTCGACTGTATATTCAGGG-
                                                     **** ** *****    ** *** 

461722-rev.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 86
 Mean pairwise identity:  76.89
 Mean single sequence MFE: -26.90
 Consensus MFE: -14.71
 Energy contribution: -15.78
 Covariance contribution:   1.06
 Mean z-score:  -2.03
 Structure conservation index:   0.55
 SVM decision value:   0.38
 SVM RNA-class probability: 0.710848
 Prediction: RNA

######################################################################

>461722_ENSMUSG00000034255_MOUSE_6286_6370/1-86
CACCUCUAACACAUUCUUCUUGCUGGAUUUGUCUUUGGGGGCCCAAGAGAGAGAGGCCCCCUUCAGUUCGACUGUGUAUUCAGGG
..(((...(((((.((.....((((((.........((((((((........).)))))))))))))..)).)))))....))). ( -28.20)
>461722_ENSDARG00000006344_ZEBRAFISH_5690_5774/1-86
ACCUCCAGAACGUUUUUCUUGCUUGAUUUGUCCUUGGGCGCCCGGUUAAUUGUGGCGCCUUUCAGAUCCACUGUGAAUUCUGGGA
...(((((((.....(((......((((((.....((((((((((....))).)))))))..))))))......)))))))))). ( -27.50)
>461722_SINFRUG00000131017_FUGU_9289_9374/1-86
AACCUCCAAAACAUUCUUUUUGCUGGAUUUGUCUUUUGUGGCCCAGCAAAUAGUCGCUCCUUUCAGGUCCACUGUGACCUCUGGGA
...............((.((((((((....(((......))))))))))).))....((((...(((((......)))))..)))) ( -22.90)
>461722_ENSRNOG00000028569_RAT_5899_5983/1-86
CACCUCUAGCACAUUCUUCUUGCUGGAUUUGUCUUUGGGGGCCCACGAGAGCGAGGCCCCCCUCAGUUCGACUGUAUAUUCAGGG
..(((((((((.........))))))).........((((((((.(....).).)))))))..(((.....)))........)). ( -29.00)
>consensus
CACCUCCAAAACAUUCUUCUUGCUGGAUUUGUCUUUGGGGGCCCAGGAAAGAGAGGCCCCCUUCAGUUCCACUGUGAAUUCAGGG_
..((.....................((((((.....((((((((........).)))))))..))))))..(((......))))). (-14.71 = -15.78 +   1.06) 

461722-rev.rnaz

RNAalifold consensus structure

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