Index >

Results for CNB 469885

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment

469885_ENSG00000169840_HUMAN_9566_9739/1-175        A-GGGAGAGGAGGGGGCGAGGGCGCCTGTTACGGCGTGGGTGGGGTTGACAAGAATAGAG
469885_SINFRUG00000149945_FUGU_9675_9844/1-175      A-AAGAGAGAATGGGCAGTGC-CGCCTCTTGCGGCGTGGGTGGGGCTGACAAGAATAGAC
469885_ENSRNOG00000000952_RAT_9566_9739/1-175       -GGGAAGAGGAGGGGGCGAGTGCGCCTGTTACGGCGTGGGTGGGGTTGACAAGAATAGAG
469885_ENSDARG00000026734_ZEBRAFISH_9427_9598/1-175 A-AAGGGAGAAGGGGCAGTAC-CGCCTCTTGCAGTGTGGGTGGGGCTGACAAGAATAGAC
                                                          *** * ***  *    ***** ** * * ********** ************* 


469885_ENSG00000169840_HUMAN_9566_9739/1-175        TACATTATGCAGTTCATTTAGTTAACAAGTGAAATAATGAGGAAGCGTGCAGAGTGAATG
469885_SINFRUG00000149945_FUGU_9675_9844/1-175      TACATTATGCAGTTCATTTAGTTAACAAGTGAAATAATGGGGAAGCGTGCAGTGGGAATG
469885_ENSRNOG00000000952_RAT_9566_9739/1-175       TACATTATGCAGTTCATTTAGTTAACAAGTGAAATAATGAGGAAGCGTGCAGAGTGAATG
469885_ENSDARG00000026734_ZEBRAFISH_9427_9598/1-175 TACATTATGCAGTTCATTTAGTTAACAAGTGAAATAATAGGGAAGCGTGCAGAGTGAATG
                                                    **************************************  ************ * *****


469885_ENSG00000169840_HUMAN_9566_9739/1-175        CCAAGAGAAAAGGCACAAAAACCCTATTGAGAGGCCCCGGCCGCTCCTGGCGTAG
469885_SINFRUG00000149945_FUGU_9675_9844/1-175      CCGAGAGAAA-GGCACAAAA-CCCTATTGAGAGCTTTTGGCCGCTTACAGCGTA-
469885_ENSRNOG00000000952_RAT_9566_9739/1-175       CCAAGAGAAAGGGCACAAAAACCCTATTGAGAGGCCCCGGCCGCTCCTGGCGTAG
469885_ENSDARG00000026734_ZEBRAFISH_9427_9598/1-175 CCGAGAGAAAAGGCACAAAA-CCCTATTGAGAGCTCTCAGCCGCTAGTAGCGTAA
                                                    ** ******* ********* ************      ******    ***** 


//

469885.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 175
 Mean pairwise identity:  86.41
 Mean single sequence MFE: -52.27
 Consensus MFE: -34.35
 Energy contribution: -37.85
 Covariance contribution:   3.50
 Mean z-score:  -1.55
 Structure conservation index:   0.66
 SVM decision value:  -0.05
 SVM RNA-class probability: 0.506078
 Prediction: RNA

######################################################################

>469885_ENSG00000169840_HUMAN_9566_9739/1-175
AGGGAGAGGAGGGGGCGAGGGCGCCUGUUACGGCGUGGGUGGGGUUGACAAGAAUAGAGUACAUUAUGCAGUUCAUUUAGUUAACAAGUGAAAUAAUGAGGAAGCGUGCAGAGUGAAUGCCAAGAGAAAAGGCACAAAAACCCUAUUGAGAGGCCCCGGCCGCUCCUGGCGUAG
.(((((.((..(((((....(((((......))))).(((((((((...............((((.((((.(((((((.(....)))))))).......(....).)))).))))..((((.........))))....))))))))).....)))))..)).)))))....... ( -58.10)
>469885_SINFRUG00000149945_FUGU_9675_9844/1-175
AAAGAGAGAAUGGGCAGUGCCGCCUCUUGCGGCGUGGGUGGGGCUGACAAGAAUAGACUACAUUAUGCAGUUCAUUUAGUUAACAAGUGAAAUAAUGGGGAAGCGUGCAGUGGGAAUGCCGAGAGAAAGGCACAAAACCCUAUUGAGAGCUUUUGGCCGCUUACAGCGUA
..........((.((...(((((.....)))))((((((((...................((((((....(((((((.(....)))))))))))))).((((((...(((((((..((((........))))......)))))))...))))))..)))))))).)).)) ( -50.30)
>469885_ENSRNOG00000000952_RAT_9566_9739/1-175
GGGAAGAGGAGGGGGCGAGUGCGCCUGUUACGGCGUGGGUGGGGUUGACAAGAAUAGAGUACAUUAUGCAGUUCAUUUAGUUAACAAGUGAAAUAAUGAGGAAGCGUGCAGAGUGAAUGCCAAGAGAAAGGGCACAAAAACCCUAUUGAGAGGCCCCGGCCGCUCCUGGCGUAG
((((.(.((..(((((....(((((......))))).(((((((((...............((((.((((.(((((((.(....)))))))).......(....).)))).))))..((((.........))))....))))))))).....)))))..)).)))))....... ( -53.70)
>469885_ENSDARG00000026734_ZEBRAFISH_9427_9598/1-175
AAAGGGAGAAGGGGCAGUACCGCCUCUUGCAGUGUGGGUGGGGCUGACAAGAAUAGACUACAUUAUGCAGUUCAUUUAGUUAACAAGUGAAAUAAUAGGGAAGCGUGCAGAGUGAAUGCCGAGAGAAAAGGCACAAAACCCUAUUGAGAGCUCUCAGCCGCUAGUAGCGUAA
...((((((((((((......)))))))(((((((((...(..((....))..)...))))))..)))..(((((((.(....)))))))).((((((((..((.......))...((((.........)))).....))))))))....)))))...(((.....)))... ( -47.00)
>consensus
A_AAGAGAGAAGGGGCAGAGC_CGCCUCUUACGGCGUGGGUGGGGCUGACAAGAAUAGACUACAUUAUGCAGUUCAUUUAGUUAACAAGUGAAAUAAUGAGGAAGCGUGCAGAGUGAAUGCCAAGAGAAAAGGCACAAAA_CCCUAUUGAGAGCCCCCGGCCGCUCCUAGCGUAG
.......(((((.(((((..((((((......))))))(((((((((...............((((.((((.(((((((.(....)))))))).......(....).)))).))))..((((.........))))....))))))))).........))))).)))))....... (-34.35 = -37.85 +   3.50) 

469885.rnaz

RNAalifold consensus structure

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