RNAz cluster #10044

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr1
Length	79
Position	216,679,607 - 216,679,686
Average P	0.999182
Maximum P	0.999248
Strand winner	+

Structure	Start	End	Strand	N	Length	ID	SCI	z	P
#22423	216,679,607	216,679,686	+	5	80	84.79	0.82	-5.06	0.999248
#22426	216,679,607	216,679,686	-	5	80	84.79	0.81	-3.56	0.999116

Overview

RNA annotation

RNAdb

ID	E-value	Identity	Strand	Name
LIT3241	4.7e-38	100	-	miR-215 Homo sapiens (combinedlit)
LIT2518	5.2e-10	86.67	-	miR-215 Mus musculus (combinedlit)

Rfam

ID	E-value	Identity	Strand	Name
RF00130	1.2e-38	100	-	mir-192

microRNA registry

ID	E-value	Identity	Strand	Name
hsa-mir-215	1.6e-40	100	-	hsa-mir-215
mmu-mir-215	1.8e-12	86.67	-	mmu-mir-215
gga-mir-215	1.1e-10	100	-	gga-mir-215
gga-mir-215	2.7e-08	96.43	-	gga-mir-215

UTRdb

No hits below threshold in UTRdb

NONCODE

No hits below threshold in NONCODE

Coding gene annotation

Known genes based on SWISS-PROT, TrEMBL, mRNA, and RefSeq

ID	Name	Strand	Exon	Intron	5'-UTR	CDS	3'-UTR
AK022665	Hypothetical protein FLJ12603.	+
D28500	Mitochondrial isoleucine tRNA synthetase (Fragment).	+
AK001188	Hypothetical protein FLJ10326.	+
BC010218	FLJ10326 protein (Fragment).	+
BC040376	Mitochondrial isoleucine tRNA synthetase.	+
BC047880	FLJ10326 protein.	+

RefSeq genes

ID	Name	Strand	Exon	Intron	5'-UTR	CDS	3'-UTR
NM_018060	Mitochondrial isoleucine tRNA synthetase	+

Genscan predictions

ID	Strand	Exon	Intron
NT_021877.313	+

Geneid predictions

ID	Strand	Exon	Intron
chr1_2468.1	+

EST

ID	Strand	Exon	Intron
CB155808	+
AW893700	?