RNAz cluster #13717
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr10 |
| Length | 179 |
| Position | 97,145,716 - 97,145,895 |
| Average P | 0.984065 |
| Maximum P | 0.999862 |
| Strand winner | - |
| Structure | Start | End | Strand | N | Length | ID | SCI | z | P |
|---|---|---|---|---|---|---|---|---|---|
| #28803 | 97,145,716 | 97,145,836 | - | 4 | 120 | 69.94 | 0.63 | -1.7 | 0.947621 |
| #28805 | 97,145,756 | 97,145,875 | + | 4 | 120 | 79.42 | 0.71 | -2.35 | 0.9832 |
| #28808 | 97,145,756 | 97,145,875 | - | 4 | 120 | 79.42 | 0.83 | -2.9 | 0.998928 |
| #28810 | 97,145,796 | 97,145,895 | + | 4 | 105 | 77.24 | 0.72 | -2.28 | 0.990715 |
| #28812 | 97,145,796 | 97,145,895 | - | 4 | 105 | 77.24 | 0.77 | -3.22 | 0.999862 |
Overview
RNA annotation
RNAdb
No hits below threshold in RNAdb
Rfam
No hits below threshold in Rfam
microRNA registry
No hits below threshold in microRNA registry
UTRdb
No hits below threshold in UTRdb
NONCODE
No hits below threshold in NONCODE
Coding gene annotation
Known genes based on SWISS-PROT, TrEMBL, mRNA, and RefSeq
| ID | Name | Strand | Exon | Intron | 5'-UTR | CDS | 3'-UTR |
|---|---|---|---|---|---|---|---|
| AJ489942 | C-Cbl associated protein. | - |  |
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| AF136380 | SH3P12 protein. | - | |
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| AF136381 | C-Cbl-associated protein SH3P12. | - | |
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| AF330623 | Brain R85FL (Retina R85). | - | |
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| AF356525 | Sorbin and SH3 domain containing 1 | - | |
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| AF356526 | Sorbin and SH3 domain containing 1. | - | |
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| AF356527 | Sorbin and SH3 domain containing 1. | - | |
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| BC042612 | Similar to sorbin and SH3 domain containing 1. | - | |
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| AB037717 | Hypothetical protein KIAA1296 (Fragment). | - | |
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| AK022468 | Hypothetical protein FLJ12406. | - | |
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| AL117472 | Hypothetical protein. | - | |
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RefSeq genes
| ID | Name | Strand | Exon | Intron | 5'-UTR | CDS | 3'-UTR |
|---|---|---|---|---|---|---|---|
| NM_006434 | Sorbin and SH3 domain containing 1 | - | |
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| NM_015385 | Sorbin and SH3 domain containing 1 | - | |
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Genscan predictions
| ID | Strand | Exon | Intron |
|---|---|---|---|
| NT_030059.319 | - | |
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Geneid predictions
| ID | Strand | Exon | Intron |
|---|---|---|---|
| chr10_992.1 | - | |
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EST
| ID | Strand | Exon | Intron |
|---|---|---|---|
| BF674512 | - | |
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