RNAz cluster #1391
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr1 |
| Length | 127 |
| Position | 28,727,511 - 28,727,638 |
| Average P | 0.955424 |
| Maximum P | 0.987746 |
| Strand winner | - |
| Structure | Start | End | Strand | N | Length | ID | SCI | z | P |
|---|---|---|---|---|---|---|---|---|---|
| #6214 | 28,727,511 | 28,727,638 | + | 6 | 130 | 73.44 | 0.62 | -1.68 | 0.923102 |
| #6217 | 28,727,511 | 28,727,638 | - | 6 | 130 | 73.44 | 0.84 | -2.04 | 0.987746 |
Overview
RNA annotation
RNAdb
| ID | E-value | Identity | Strand | Name |
|---|---|---|---|---|
| LIT1349 | 0 | 100 | - | ACA44 Homo sapiens (combinedlit) |
| LIT1145 | 4.2e-21 | 87.18 | - | MBI-64 Mus musculus (combinedlit) |
Rfam
No hits below threshold in Rfam
microRNA registry
No hits below threshold in microRNA registry
UTRdb
No hits below threshold in UTRdb
NONCODE
| ID | E-value | Identity | Strand | Name |
|---|---|---|---|---|
| n3731 | 0 | 100 | - | ACA44 snoRNA |
| n1512 | 1.9e-22 | 87.18 | - | snoRNA |
Coding gene annotation
Known genes based on SWISS-PROT, TrEMBL, mRNA, and RefSeq
| ID | Name | Strand | Exon | Intron | 5'-UTR | CDS | 3'-UTR |
|---|---|---|---|---|---|---|---|
| AF277181 | PNAS-123. | - |  |
 |
|
|
|
RefSeq genes
No RefSeq genes in this region.
Genscan predictions
No Genscan gene prediction in this region.
Geneid predictions
| ID | Strand | Exon | Intron |
|---|---|---|---|
| chr1_555.1 | + | |
|
EST
| ID | Strand | Exon | Intron |
|---|---|---|---|
| AA905228 | - | |
|
| BG540292 | ? | |
|
| BI771152 | - | |
|
| CD110660 | ? | |
|