RNAz cluster #16165
Summary
| Genome/Assembly |
hg17 |
| Chromosome/Contig | chr11 |
| Length |
133 |
| Position |
8,662,345 - 8,662,478 |
| Average P |
0.747248 |
| Maximum P |
0.977388 |
| Strand winner |
+ |
| Structure | Start | End | Strand |
N | Length | ID | SCI | z | P |
|---|
|
#33300 |
8,662,345 |
8,662,478 |
+ |
6 |
145 |
71.55 |
0.74 |
-4.17 |
0.977388 |
|
#33302 |
8,662,345 |
8,662,478 |
- |
6 |
145 |
71.55 |
0.42 |
-1.72 |
0.517108 |
Overview
RNA annotation
RNAdb
| ID | E-value | Identity | Strand | Name |
|---|
|
LIT1289 |
0 |
100 |
+ |
ACA3 Homo sapiens (combinedlit) |
|
LIT1186 |
1.8e-23 |
89.69 |
+ |
MBI-28 Mus musculus (combinedlit) |
Rfam
| ID | E-value | Identity | Strand | Name |
|---|
|
RF00334 |
0 |
100 |
+ |
snoMBI-28 |
|
RF00334 |
4.7e-24 |
89.69 |
+ |
snoMBI-28 |
microRNA registry
No hits below threshold in microRNA registry
UTRdb
No hits below threshold in UTRdb
NONCODE
| ID | E-value | Identity | Strand | Name |
|---|
|
n3693 |
0 |
100 |
+ |
ACA3 snoRNA |
|
n1508 |
8.2e-25 |
89.69 |
+ |
snoRNA |
Coding gene annotation
Known genes based on SWISS-PROT, TrEMBL, mRNA, and RefSeq
| ID | Name | Strand | Exon |
Intron | 5'-UTR | CDS | 3'-UTR |
|---|
| BC066326 |
Hypothetical protein. |
+ |
 |
 |
|
|
|
| BC020169 |
Ribosomal protein L27a |
+ |
|
|
|
|
|
RefSeq genes
| ID | Name | Strand | Exon |
Intron | 5'-UTR | CDS | 3'-UTR |
|---|
| NM_000990 |
Ribosomal protein L27a |
+ |
|
|
|
|
|
Genscan predictions
| ID | Strand | Exon |
Intron |
|---|
| NT_009237.326 |
+ |
|
|
Geneid predictions
| ID | Strand | Exon |
Intron |
|---|
| chr11_230.1 |
+ |
|
|
EST