RNAz cluster #16399
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr11 |
| Length | 343 |
| Position | 13,693,282 - 13,693,625 |
| Average P | 0.846199 |
| Maximum P | 0.999888 |
| Strand winner | + |
| Structure | Start | End | Strand | N | Length | ID | SCI | z | P |
|---|---|---|---|---|---|---|---|---|---|
| #33717 | 13,693,282 | 13,693,393 | + | 5 | 120 | 70.65 | 0.43 | -1.88 | 0.834136 |
| #33720 | 13,693,360 | 13,693,472 | + | 4 | 119 | 78.98 | 0.58 | -1.94 | 0.658656 |
| #33723 | 13,693,393 | 13,693,511 | + | 4 | 120 | 79.13 | 0.73 | -4.14 | 0.999888 |
| #33724 | 13,693,393 | 13,693,511 | - | 4 | 120 | 79.13 | 0.68 | -3.75 | 0.999813 |
| #33729 | 13,693,511 | 13,693,625 | + | 4 | 120 | 77.68 | 0.66 | -1.75 | 0.738501 |
Overview
RNA annotation
RNAdb
No hits below threshold in RNAdb
Rfam
No hits below threshold in Rfam
microRNA registry
No hits below threshold in microRNA registry
UTRdb
No hits below threshold in UTRdb
NONCODE
No hits below threshold in NONCODE
Coding gene annotation
Known genes based on SWISS-PROT, TrEMBL, mRNA, and RefSeq
| ID | Name | Strand | Exon | Intron | 5'-UTR | CDS | 3'-UTR |
|---|---|---|---|---|---|---|---|
| AY358784 | VSIP2423. | + |  |
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RefSeq genes
| ID | Name | Strand | Exon | Intron | 5'-UTR | CDS | 3'-UTR |
|---|---|---|---|---|---|---|---|
| NM_032228 | Male sterility domain containing 2 | + | |
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Genscan predictions
| ID | Strand | Exon | Intron |
|---|---|---|---|
| NT_009237.446 | + | |
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Geneid predictions
| ID | Strand | Exon | Intron |
|---|---|---|---|
| chr11_291.1 | + | |
|
EST
| ID | Strand | Exon | Intron |
|---|---|---|---|
| AW816964 | ? | |
|
| BM766153 | + | |
|