RNAz cluster #17698
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr11 |
| Length | 159 |
| Position | 43,883,889 - 43,884,048 |
| Average P | 0.799853 |
| Maximum P | 0.962065 |
| Strand winner | - |
| Structure | Start | End | Strand | N | Length | ID | SCI | z | P |
|---|---|---|---|---|---|---|---|---|---|
| #35954 | 43,883,889 | 43,884,008 | - | 4 | 120 | 83.31 | 0.8 | -2.26 | 0.962065 |
| #35955 | 43,883,929 | 43,884,048 | + | 4 | 120 | 86.96 | 0.69 | -1.66 | 0.609943 |
| #35956 | 43,883,929 | 43,884,048 | - | 4 | 120 | 86.96 | 0.81 | -1.83 | 0.827552 |
Overview
RNA annotation
RNAdb
No hits below threshold in RNAdb
Rfam
No hits below threshold in Rfam
microRNA registry
No hits below threshold in microRNA registry
UTRdb
No hits below threshold in UTRdb
NONCODE
No hits below threshold in NONCODE
Coding gene annotation
Known genes based on SWISS-PROT, TrEMBL, mRNA, and RefSeq
| ID | Name | Strand | Exon | Intron | 5'-UTR | CDS | 3'-UTR |
|---|---|---|---|---|---|---|---|
| AB042029 | Prostate cancer antigen-1. | + |  |
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| BC067257 | DEPC-1 protein. | + | |
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| BC015155 | Similar to RIKEN cDNA 1810020C19 gene. | + | |
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RefSeq genes
| ID | Name | Strand | Exon | Intron | 5'-UTR | CDS | 3'-UTR |
|---|---|---|---|---|---|---|---|
| NM_139178 | Prostate cancer antigen-1 | + | |
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Genscan predictions
| ID | Strand | Exon | Intron |
|---|---|---|---|
| NT_009237.971 | + | |
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Geneid predictions
| ID | Strand | Exon | Intron |
|---|---|---|---|
| chr11_490.1 | + | |
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EST
| ID | Strand | Exon | Intron |
|---|---|---|---|
| AA169457 | + | |
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| BG107801 | ? | |
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| BQ717533 | - | |
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