RNAz cluster #5504
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr1 |
| Length | 62 |
| Position | 103,200,720 - 103,200,782 |
| Average P | 0.999569 |
| Maximum P | 0.999734 |
| Strand winner | + |
| Structure | Start | End | Strand | N | Length | ID | SCI | z | P |
|---|---|---|---|---|---|---|---|---|---|
| #13968 | 103,200,720 | 103,200,782 | + | 5 | 66 | 77.47 | 0.69 | -4.52 | 0.999734 |
| #13969 | 103,200,720 | 103,200,782 | - | 5 | 66 | 77.47 | 0.81 | -4.34 | 0.999404 |
Overview
RNA annotation
RNAdb
No hits below threshold in RNAdb
Rfam
No hits below threshold in Rfam
microRNA registry
No hits below threshold in microRNA registry
UTRdb
No hits below threshold in UTRdb
NONCODE
No hits below threshold in NONCODE
Coding gene annotation
Known genes based on SWISS-PROT, TrEMBL, mRNA, and RefSeq
| ID | Name | Strand | Exon | Intron | 5'-UTR | CDS | 3'-UTR |
|---|---|---|---|---|---|---|---|
| J04177 | Collagen, type XI, alpha 1 | - |  |
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RefSeq genes
| ID | Name | Strand | Exon | Intron | 5'-UTR | CDS | 3'-UTR |
|---|---|---|---|---|---|---|---|
| NM_001854 | Alpha 1 type XI collagen isoform A | - | |
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| NM_080629 | Alpha 1 type XI collagen isoform B | - | |
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| NM_080630 | Alpha 1 type XI collagen isoform C | - | |
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Genscan predictions
| ID | Strand | Exon | Intron |
|---|---|---|---|
| NT_032977.1012 | - | |
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Geneid predictions
| ID | Strand | Exon | Intron |
|---|---|---|---|
| chr1_1289.1 | - | |
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EST
| ID | Strand | Exon | Intron |
|---|---|---|---|
| AU117295 | ? | |
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| AW068361 | - | |
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