RNAz cluster #24281

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr12
Length	85
Position	56,504,659 - 56,504,744
Average P	0.971047
Maximum P	0.997841
Strand winner	+

Structure Start End Strand N Length ID SCI z P

#48741 56,504,659 56,504,744 + 6 91 70.55 0.61 -3.33 0.997841

#48744 56,504,659 56,504,744 - 6 91 70.55 0.91 -6.1 0.944253

Overview

Overview

RNA annotation

RNAdb

ID	E-value	Identity	Strand	Name
LIT2849	5.40004e-41	100	-	miR-26a Homo sapiens (combinedlit)
LIT2850	1.1e-26	92.77	-	miR-26a Mus musculus (combinedlit)

Rfam

ID	E-value	Identity	Strand	Name
RF00244	3.3e-36	100	-	mir-26

microRNA registry

ID	E-value	Identity	Strand	Name
hsa-mir-26a-2	1.79366e-43	100	-	hsa-mir-26a-2
mmu-mir-26a-2	3.8e-29	92.77	-	mmu-mir-26a-2
gga-mir-26a	1.9e-09	96.67	-	gga-mir-26a
rno-mir-26a	2.9e-08	100	-	rno-mir-26a
mmu-mir-26a-1	2.9e-08	100	-	mmu-mir-26a-1
hsa-mir-26a-1	2.9e-08	100	-	hsa-mir-26a-1

UTRdb

No hits below threshold in UTRdb

NONCODE

No hits below threshold in NONCODE

Coding gene annotation

Known genes based on SWISS-PROT, TrEMBL, mRNA, and RefSeq

ID	Name	Strand	Exon	Intron	5'-UTR	CDS	3'-UTR
BC065920	Hypothetical protein.	-
AF000152	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2	-

RefSeq genes

ID	Name	Strand	Exon	Intron	5'-UTR	CDS	3'-UTR
NM_005730	Nuclear LIM interactor-interacting factor 2	-

Genscan predictions

ID	Strand	Exon	Intron
NT_029419.560	-

Geneid predictions

ID	Strand	Exon	Intron
chr12_720.1	-

EST

ID	Strand	Exon	Intron
AA195197	?
AA424302	-