RNAz cluster #31870
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr14 |
| Length | 141 |
| Position | 64,475,622 - 64,475,763 |
| Average P | 0.998835 |
| Maximum P | 0.998835 |
| Strand winner | - |
| Structure | Start | End | Strand | N | Length | ID | SCI | z | P |
|---|---|---|---|---|---|---|---|---|---|
| #61727 | 64,475,622 | 64,475,763 | - | 4 | 147 | 80.21 | 0.73 | -3.08 | 0.998835 |
Overview
RNA annotation
RNAdb
No hits below threshold in RNAdb
Rfam
| ID | E-value | Identity | Strand | Name |
|---|---|---|---|---|
| RF00031 | 8e-26 | 100 | - | SECIS |
| RF00031 | 4.1e-09 | 89.8 | - | SECIS |
microRNA registry
No hits below threshold in microRNA registry
UTRdb
| ID | E-value | Identity | Strand | Name |
|---|---|---|---|---|
| U0003 | 0 | 100 | - | Selenocysteine Insertion Sequence (SECIS) - |
| U0003 | 0 | 99.17 | - | Selenocysteine Insertion Sequence (SECIS) - |
| U0003 | 2.2e-14 | 91.23 | - | Selenocysteine Insertion Sequence (SECIS) - |
NONCODE
No hits below threshold in NONCODE
Coding gene annotation
Known genes based on SWISS-PROT, TrEMBL, mRNA, and RefSeq
| ID | Name | Strand | Exon | Intron | 5'-UTR | CDS | 3'-UTR |
|---|---|---|---|---|---|---|---|
| BC022820 | GPX2 protein. | - |  |
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| X53463 | Glutathione peroxidase 2 (gastrointestinal) | - | |
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RefSeq genes
| ID | Name | Strand | Exon | Intron | 5'-UTR | CDS | 3'-UTR |
|---|---|---|---|---|---|---|---|
| NM_002083 | Gastrointestinal glutathione peroxidase 2 | - | |
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Genscan predictions
No Genscan gene prediction in this region.
Geneid predictions
No Geneid gene prediction in this region.
EST
| ID | Strand | Exon | Intron |
|---|---|---|---|
| AA826765 | ? | |
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| AW804538 | ? | |
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| BE615768 | - | |
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| BG575665 | + | |
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| BQ644866 | - | |
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