RNAz cluster #44330

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr17
Length	113
Position	44,012,203 - 44,012,316
Average P	0.966903
Maximum P	0.993846
Strand winner	+

Structure	Start	End	Strand	N	Length	ID	SCI	z	P
#84663	44,012,203	44,012,316	+	6	120	74.65	0.63	-2.59	0.993846
#84668	44,012,203	44,012,316	-	6	120	74.65	0.96	-3.8	0.93996

Overview

RNA annotation

RNAdb

ID	E-value	Identity	Strand	Name
LIT3081	0	100	-	miR-10a Homo sapiens (combinedlit)
LIT1775	0	100	-	miR-10a Mus musculus (combinedlit)
LIT1776	0	100	-	miR-10a Mus musculus (combinedlit)
LIT1648	0	100	-	miR-10a Rattus norvegicus (combinedlit)

Rfam

ID	E-value	Identity	Strand	Name
RF00104	2.9e-37	100	-	mir-10
RF00104	1.3e-08	96.88	-	mir-10
RF00104	2e-07	96.67	-	mir-10
RF00104	1.3e-08	100	-	mir-10

microRNA registry

ID	E-value	Identity	Strand	Name
hsa-mir-10a	0	100	-	hsa-mir-10a
rno-mir-10a	0	100	-	rno-mir-10a
mmu-mir-10a	0	100	-	mmu-mir-10a
dre-mir-10a	1.1e-17	86.73	-	dre-mir-10a
dre-mir-10b	4e-08	96.43	-	dre-mir-10b
gga-mir-10b	4e-08	96.43	-	gga-mir-10b
rno-mir-10b	4e-08	96.43	-	rno-mir-10b
hsa-mir-10b	4e-08	96.43	-	hsa-mir-10b
mmu-mir-10b	4e-08	96.43	-	mmu-mir-10b
dps-mir-10	6.3e-07	100	-	dps-mir-10
dme-mir-10	6.3e-07	100	-	dme-mir-10

UTRdb

No hits below threshold in UTRdb

NONCODE

No hits below threshold in NONCODE

Coding gene annotation

Known genes based on SWISS-PROT, TrEMBL, mRNA, and RefSeq

No gene from this set in this region.

RefSeq genes

No RefSeq genes in this region.

Genscan predictions

ID	Strand	Exon	Intron
NT_010783.152	-

Geneid predictions

ID	Strand	Exon	Intron
chr17_927.1	-

EST

ID	Strand	Exon	Intron
AI125255	+
AW852509	?
CN265475	-
CN286812	?