RNAz cluster #44583

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr17
Length	569
Position	45,998,103 - 45,998,672
Average P	0.901284
Maximum P	0.999689
Strand winner	+

Structure Start End Strand N Length ID SCI z P

#85208 45,998,103 45,998,218 - 4 120 77.98 0.48 -2.94 0.947796

#85212 45,998,143 45,998,258 + 4 120 80.8 0.64 -2.99 0.99453

#85218 45,998,179 45,998,297 + 4 120 83.29 0.87 -3.34 0.998713

#85220 45,998,179 45,998,297 - 4 120 83.29 0.65 -2.51 0.941641

#85222 45,998,218 45,998,333 + 4 120 87.18 0.77 -2.03 0.869877

#85224 45,998,218 45,998,333 - 4 120 87.18 0.65 -1.79 0.554793

#85237 45,998,296 45,998,413 - 3 120 94.13 0.95 -2.45 0.964564

#85241 45,998,333 45,998,449 + 4 120 95.63 0.96 -1.69 0.821239

#85253 45,998,373 45,998,489 - 4 120 91.41 0.84 -1.42 0.538603

#85260 45,998,413 45,998,519 - 4 120 79.29 0.64 -3.05 0.997974

#85261 45,998,449 45,998,554 + 4 118 75.18 0.53 -2.18 0.877521

#85267 45,998,489 45,998,594 + 5 120 66.84 0.39 -2.27 0.970579

#85271 45,998,518 45,998,632 + 5 120 76.94 0.44 -2.43 0.977296

#85273 45,998,518 45,998,632 - 5 120 76.94 0.58 -2.24 0.96697

#85274 45,998,554 45,998,672 + 5 120 75 0.57 -3.14 0.999689

#85275 45,998,554 45,998,672 - 5 120 75 0.58 -2.76 0.998761

Structure	Start	End	Strand	N	Length	ID	SCI	z	P
#85208	45,998,103	45,998,218	-	4	120	77.98	0.48	-2.94	0.947796
#85212	45,998,143	45,998,258	+	4	120	80.8	0.64	-2.99	0.99453
#85218	45,998,179	45,998,297	+	4	120	83.29	0.87	-3.34	0.998713
#85220	45,998,179	45,998,297	-	4	120	83.29	0.65	-2.51	0.941641
#85222	45,998,218	45,998,333	+	4	120	87.18	0.77	-2.03	0.869877
#85224	45,998,218	45,998,333	-	4	120	87.18	0.65	-1.79	0.554793
#85237	45,998,296	45,998,413	-	3	120	94.13	0.95	-2.45	0.964564
#85241	45,998,333	45,998,449	+	4	120	95.63	0.96	-1.69	0.821239
#85253	45,998,373	45,998,489	-	4	120	91.41	0.84	-1.42	0.538603
#85260	45,998,413	45,998,519	-	4	120	79.29	0.64	-3.05	0.997974
#85261	45,998,449	45,998,554	+	4	118	75.18	0.53	-2.18	0.877521
#85267	45,998,489	45,998,594	+	5	120	66.84	0.39	-2.27	0.970579
#85271	45,998,518	45,998,632	+	5	120	76.94	0.44	-2.43	0.977296
#85273	45,998,518	45,998,632	-	5	120	76.94	0.58	-2.24	0.96697
#85274	45,998,554	45,998,672	+	5	120	75	0.57	-3.14	0.999689
#85275	45,998,554	45,998,672	-	5	120	75	0.58	-2.76	0.998761

Overview

RNA annotation

RNAdb

No hits below threshold in RNAdb

Rfam

No hits below threshold in Rfam

microRNA registry

No hits below threshold in microRNA registry

UTRdb

No hits below threshold in UTRdb

NONCODE

No hits below threshold in NONCODE

Coding gene annotation

Known genes based on SWISS-PROT, TrEMBL, mRNA, and RefSeq

ID	Name	Strand	Exon	Intron	5'-UTR	CDS	3'-UTR
AF134986	Calcium channel, voltage-dependent, alpha 1G subunit	+

RefSeq genes

ID	Name	Strand
NM_198397	Voltage-dependent calcium channel alpha 1G	+
NM_018896	Voltage-dependent calcium channel alpha 1G	+
NM_198376	Voltage-dependent calcium channel alpha 1G	+
NM_198377	Voltage-dependent calcium channel alpha 1G	+
NM_198378	Voltage-dependent calcium channel alpha 1G	+
NM_198379	Voltage-dependent calcium channel alpha 1G	+
NM_198380	Voltage-dependent calcium channel alpha 1G	+
NM_198382	Voltage-dependent calcium channel alpha 1G	+
NM_198383	Voltage-dependent calcium channel alpha 1G	+
NM_198384	Voltage-dependent calcium channel alpha 1G	+
NM_198385	Voltage-dependent calcium channel alpha 1G	+
NM_198386	Voltage-dependent calcium channel alpha 1G	+
NM_198387	Voltage-dependent calcium channel alpha 1G	+
NM_198388	Voltage-dependent calcium channel alpha 1G	+
NM_198396	Voltage-dependent calcium channel alpha 1G	+

Genscan predictions

ID	Strand	Exon	Intron
NT_010783.229	+

Geneid predictions

ID	Strand	Exon	Intron
chr17_984.1	+

EST

ID	Strand	Exon	Intron
CD629494	?