RNAz cluster #46245
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr18 |
| Length | 60 |
| Position | 351,384 - 351,444 |
| Average P | 0.999098 |
| Maximum P | 0.999341 |
| Strand winner | + |
| Structure | Start | End | Strand | N | Length | ID | SCI | z | P |
|---|---|---|---|---|---|---|---|---|---|
| #88278 | 351,384 | 351,444 | + | 4 | 60 | 83.29 | 1.01 | -3.34 | 0.999341 |
| #88279 | 351,384 | 351,444 | - | 4 | 60 | 83.29 | 0.89 | -3.35 | 0.998855 |
Overview
RNA annotation
RNAdb
No hits below threshold in RNAdb
Rfam
No hits below threshold in Rfam
microRNA registry
No hits below threshold in microRNA registry
UTRdb
No hits below threshold in UTRdb
NONCODE
No hits below threshold in NONCODE
Coding gene annotation
Known genes based on SWISS-PROT, TrEMBL, mRNA, and RefSeq
| ID | Name | Strand | Exon | Intron | 5'-UTR | CDS | 3'-UTR |
|---|---|---|---|---|---|---|---|
| AB038518 | Scavenger receptor with C-type lectin type I. | - |  |
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| AB052103 | Scavenger receptor with C-type lectin type II. | - | |
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RefSeq genes
| ID | Name | Strand | Exon | Intron | 5'-UTR | CDS | 3'-UTR |
|---|---|---|---|---|---|---|---|
| NM_030781 | Collectin sub-family member 12 isoform II | - | |
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| NM_130386 | Collectin sub-family member 12 isoform I | - | |
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Genscan predictions
No Genscan gene prediction in this region.
Geneid predictions
| ID | Strand | Exon | Intron |
|---|---|---|---|
| chr18_5.1 | - | |
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EST
| ID | Strand | Exon | Intron |
|---|---|---|---|
| CN397886 | - | |
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| CN397882 | ? | |
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