RNAz cluster #53790

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr2
Length	196
Position	65,297,447 - 65,297,643
Average P	0.927805
Maximum P	0.999776
Strand winner	+

Structure Start End Strand N Length ID SCI z P

#102180 65,297,447 65,297,565 + 4 120 80.5 0.84 -1.71 0.834246

#102182 65,297,487 65,297,605 + 4 120 79.52 0.86 -3.68 0.999776

#102183 65,297,487 65,297,605 - 4 120 79.52 0.49 -2.79 0.846907

#102185 65,297,527 65,297,642 + 4 120 81.05 0.9 -2.11 0.976555

#102189 65,297,527 65,297,642 - 4 120 81.05 0.63 -2.22 0.89667

#102192 65,297,565 65,297,643 + 4 81 82.7 0.91 -2.1 0.972294

#102193 65,297,565 65,297,643 - 4 81 82.7 0.79 -2.31 0.968189

Structure	Start	End	Strand	N	Length	ID	SCI	z	P
#102180	65,297,447	65,297,565	+	4	120	80.5	0.84	-1.71	0.834246
#102182	65,297,487	65,297,605	+	4	120	79.52	0.86	-3.68	0.999776
#102183	65,297,487	65,297,605	-	4	120	79.52	0.49	-2.79	0.846907
#102185	65,297,527	65,297,642	+	4	120	81.05	0.9	-2.11	0.976555
#102189	65,297,527	65,297,642	-	4	120	81.05	0.63	-2.22	0.89667
#102192	65,297,565	65,297,643	+	4	81	82.7	0.91	-2.1	0.972294
#102193	65,297,565	65,297,643	-	4	81	82.7	0.79	-2.31	0.968189

Overview

RNA annotation

RNAdb

ID	E-value	Identity	Strand	Name
LIT1317	8e-33	86.39	+	U19 Homo sapiens (combinedlit)

Rfam

ID	E-value	Identity	Strand	Name
RF00090	0	100	+	U19
RF00090	2e-33	86.39	+	U19

microRNA registry

No hits below threshold in microRNA registry

UTRdb

No hits below threshold in UTRdb

NONCODE

ID	E-value	Identity	Strand	Name
n5790	3.5e-34	86.39	+	u19

Coding gene annotation

Known genes based on SWISS-PROT, TrEMBL, mRNA, and RefSeq

No gene from this set in this region.

RefSeq genes

No RefSeq genes in this region.

Genscan predictions

ID	Strand	Exon	Intron
NT_022184.872	-

Geneid predictions

No Geneid gene prediction in this region.

EST

ID	Strand	Exon	Intron
AA001398	?