RNAz cluster #61845
Summary
| Genome/Assembly |
hg17 |
| Chromosome/Contig | chr20 |
| Length |
227 |
| Position |
17,891,375 - 17,891,602 |
| Average P |
0.926776 |
| Maximum P |
0.998416 |
| Strand winner |
- |
| Structure | Start | End | Strand |
N | Length | ID | SCI | z | P |
|---|
|
#116610 |
17,891,375 |
17,891,490 |
- |
4 |
120 |
81.77 |
0.74 |
-1.96 |
0.878526 |
|
#116612 |
17,891,413 |
17,891,530 |
+ |
4 |
120 |
81.09 |
0.64 |
-2.47 |
0.961646 |
|
#116613 |
17,891,413 |
17,891,530 |
- |
4 |
120 |
81.09 |
0.85 |
-2.97 |
0.998416 |
|
#116614 |
17,891,450 |
17,891,570 |
+ |
4 |
120 |
83.82 |
0.64 |
-1.96 |
0.727773 |
|
#116615 |
17,891,450 |
17,891,570 |
- |
4 |
120 |
83.82 |
0.93 |
-3.02 |
0.998348 |
|
#116617 |
17,891,490 |
17,891,602 |
- |
4 |
112 |
88.21 |
0.9 |
-2.87 |
0.995947 |
Overview
RNA annotation
RNAdb
| ID | E-value | Identity | Strand | Name |
|---|
|
LIT1137 |
2.1e-24 |
83.72 |
- |
MBI-43 Mus musculus (combinedlit) |
Rfam
No hits below threshold in Rfam
microRNA registry
No hits below threshold in microRNA registry
UTRdb
No hits below threshold in UTRdb
NONCODE
| ID | E-value | Identity | Strand | Name |
|---|
|
n1435 |
9.3e-26 |
83.72 |
- |
snoRNA |
Coding gene annotation
Known genes based on SWISS-PROT, TrEMBL, mRNA, and RefSeq
| ID | Name | Strand | Exon |
Intron | 5'-UTR | CDS | 3'-UTR |
|---|
| BC000100 |
Sorting nexin 5 |
- |
 |
 |
|
|
|
| BC062638 |
SNX5 protein (Fragment). |
- |
|
|
|
|
|
RefSeq genes
| ID | Name | Strand | Exon |
Intron | 5'-UTR | CDS | 3'-UTR |
|---|
| NM_014426 |
Sorting nexin 5 |
- |
|
|
|
|
|
| NM_152227 |
Sorting nexin 5 |
- |
|
|
|
|
|
Genscan predictions
No Genscan gene prediction in this region.
Geneid predictions
| ID | Strand | Exon |
Intron |
|---|
| chr20_178.1 |
- |
|
|
EST